Publications of Sebastian Will
- Hosna Jabbari,
Ian Wark, Carlo Montemagno, and
Sebastian Will.
Knotty: efficient and accurate prediction of complex RNA pseudoknot
structures.
Bioinformatics, 34(22):3849–3856, 2018.
(doi:10.1093/bioinformatics/bty420)
- Stefan Hammer,
Yann Ponty, Wei Wang, and
Sebastian Will.
Fixed-Parameter Tractable Sampling for Rna Design with Multiple
Target Structures.
In Ben Raphael, editor, Proc. of the 22th Annual
International Conferences on Computational Molecular Biology
(RECOMB'18), page 2, 2018.
[Preprint]
- Björn Grüning,
Ryan Dale, Andreas Sjodin,
Brad A. Chapman, Jillian Rowe,
Christopher H. Tomkins-Tinch, Renan Valieris, Johannes Koster and The Bioconda Team.
Bioconda: sustainable and comprehensive software distribution for the life
sciences.
Nat Methods, 15(7):475–476, 2018.
(doi:10.1038/s41592-018-0046-7)
- Martin Raden,
Syed M. Ali, Omer S. Alkhnbashi,
Anke Busch, Fabrizio Costa,
Jason A. Davis, Florian Eggenhofer,
Rick Gelhausen, Jens Georg,
Steffen Heyne, Michael Hiller,
Kousik Kundu, Robert Kleinkauf,
Steffen C. Lott, Mostafa M. Mohamed,
Alexander Mattheis, Milad Miladi,
Andreas S. Richter, Sebastian Will,
Joachim Wolff, Patrick R. Wright, and
Rolf Backofen.
Freiburg RNA tools: a central online resource for RNA-focused
research and teaching.
NAR, 46(W1):W25–W29, 2018.
(doi:10.1093/nar/gky329)
- Felix Kühnl,
Peter F. Stadler, and Sebastian Will.
Tractable Rna–ligand interaction kinetics.
BMC Bioinformatics, 18(Suppl 12):47, 2017.
(doi:10.1186/s12859-017-1823-5)
- Sven
Findeiß, Maja Etzel, Sebastian Will,
Mario Mörl, and Peter F Stadler.
Design of Artificial Riboswitches as Biosensors.
Sensors, 17(9):1990, 2017.
(doi:10.3390/s17091990)
- Jörg
Fallmann, Sebastian Will, Jan Engelhardt,
Björn Grüning, Rolf Backofen, and
Peter F Stadler.
Recent advances in Rna folding.
Journal of Biotechnology, 2017.
(doi:10.1016/j.jbiotec.2017.07.007)
- Gesine
Domin, Sven Findeiß, Manja Wachsmuth,
Sebastian Will, Peter F Stadler, and
Mario Mörl.
Applicability of a computational design approach for synthetic riboswitches.
Nucleic acids research, 45(7):4108–4119, 2017.
(doi:10.1093/nar/gkw1267)
- Björn A
Grüning, Jörg Fallmann, Dilmurat
Yusuf, Sebastian Will, Anika Erxleben,
Florian Eggenhofer, Torsten Houwaart,
Bérénice Batut, Pavankumar Videm,
Andrea Bagnacani, and others.
The Rna workbench: best practices for Rna and high-throughput sequencing
bioinformatics in Galaxy.
Nucleic Acids Research, 2017.
(doi:10.1093/nar/gkx409)
- Hosna
Jabbari, Ian Wark, Carlo Montemagno, and
Sebastian Will.
Sparsification Enables Predicting Kissing Hairpin Pseudoknot
Structures of Long RNAs in Practice.
In Russell Schwartz and Knut Reinert, editors,
17th International Workshop on Algorithms in Bioinformatics (WABI
2017), volume 88 of Leibniz International Proceedings in
Informatics (LIPIcs), pages 12:1–12:13, Dagstuhl, Germany, 2017.
Schloss Dagstuhl–Leibniz-Zentrum fuer Informatik.
(doi:10.4230/LIPIcs.WABI.2017.12)
- Felix
Kühnl, Peter F. Stadler, and Sebastian
Will.
Tractable Kinetics of Rna–Ligand Interaction.
In Anu Bourgeois, Pavel Skums,
Xiang Wan, and Alex Zelikovsky, editors,
Bioinformatics Research and Applications (ISBRA 2016), volume
9683 of LNBI, page 2. Springer International Publishing, June
2016.
(doi:10.1007/978-3-319-38782-6)
- Francesco
Righetti, Aaron M. Nuss, Christian
Twittenhoff, Sascha Beele, Kristina Urban,
Sebastian Will, Stephan H. Bernhart,
Peter F. Stadler, Petra Dersch, and
Franz Narberhaus.
Temperature-responsive in vitro Rna structurome of Yersinia
pseudotuberculosis.
Proceedings of the National Academy of Sciences,
113(26):7237–7242, 2016.
(doi:10.1073/pnas.1523004113)
- Sebastian
Will and Hosna Jabbari.
Sparse RNA folding revisited: space-efficient minimum free energy
structure prediction.
Algorithms Mol Biol, 11(7):13, 2016.
(doi:10.1186/s13015-016-0071-y)
- Sarah Juliane
Berkemer, Christian Höner zu Siederdissen,
Fabian Amman, Axel Wintsche,
Sebastian Will, Ivo Hofacker,
Sonja Prohaska, and Peter Stadler.
Processed Small RNAs in Archaea and BHB Elements.
Genomics and Computational Biology, 1(1):e18, 2015.
(doi:10.18547/gcb.2015.vol1.iss1.e18)
- Sebastian
Will and Hosna Jabbari.
Sparse Rna folding revisited: space-efficient minimum free energy
prediction.
In Mihai Pop and Hélène Touzet, editors,
Proceedings of the 15th Workshop on Algorithms in Bioinformatics (WABI
2015), volume 9289 of LNCS, pages 257–270. Springer
Berlin Heidelberg, 2015.
(doi:10.1007/978-3-662-48221-6_19)
- Sebastian
Will, Christina Otto, Milad Miladi,
Mathias Mohl, and Rolf Backofen.
SPARSE: quadratic time simultaneous alignment and folding of RNAs
without sequence-based heuristics.
Bioinformatics, 31(15):2489–2496, 2015.
(doi:10.1093/bioinformatics/btv185)
- Christina
Otto, Mathias Möhl, Steffen Heyne,
Mika Amit, Gad M. Landau, Rolf
Backofen, and Sebastian Will.
ExpaRNA-P: simultaneous exact pattern matching and folding of RNAs.
BMC Bioinformatics, 15(1):404, 2014.
(doi:10.1186/s12859-014-0404-0)
- Mika
Amit, Rolf Backofen, Steffen Heyne,
Gad M. Landau, Mathias Möhl,
Christina Otto, and Sebastian Will.
Local Exact Pattern Matching for Non-Fixed RNA Structures.
IEEE/ACM Trans. Comput. Biology Bioinform., 11(1):219–230, 2014.
(doi:10.1109/TCBB.2013.2297113)
- Sebastian
Will and Peter F. Stadler.
A common Framework for Linear and Cyclic Multiple Sequence
Alignment Problems.
In Dan Brown and Burkhard Morgenstern, editors,
Proceedings of Algorithms in Bioinformatics (WABI'14), volume
8701 of LNCS, pages 135–147. Springer Berlin Heidelberg, 2014.
(doi:10.1007/978-3-662-44753-6_11)
- Jerome
Waldispuhl, Charles W. O'Donnell, Sebastian
Will, Srinivas Devadas, Rolf Backofen, and
Bonnie Berger.
Simultaneous Alignment and Folding of Protein Sequences.
J Comput Biol, 21(7):477–491, 2014.
(doi:10.1089/cmb.2013.0163)
- Hugo
Schneider, Sebastian Bartschat, Gero Doose,
Lucas Maciel, Erick Pizani,
Marcelo Bassani, Fernando Araripe Torres,
Sebastian Will, Tainá Raiol,
Marcelo Brígido, Maria Emília Walter,
and Peter Stadler.
Genome-Wide Identification of Non-coding Rnas in Komagatella
pastoris str. Gs115.
In Sérgio Campos, editor, Advances in Bioinformatics
and Computational Biology, volume 8826 of Lecture Notes in
Computer Science, pages 115–122. Springer International Publishing,
2014.
(doi:10.1007/978-3-319-12418-6_15)
- Sita J.
Lange, Omer S. Alkhnbashi, Dominic Rose,
Sebastian Will, and Rolf Backofen.
CRISPRmap: an automated classification of repeat conservation in
prokaryotic adaptive immune systems.
Nucleic Acids Res, 41(17):8034–44, 2013.
SJL, OSA and DR contributed equally to this work.
(doi:10.1093/nar/gkt606)
- Sebastian
Will, Michael Yu, and Bonnie Berger.
Structure-based whole-genome realignment reveals many novel noncoding
RNAs.
Genome Res, 23(6):1018–1027, 2013.
(doi:10.1101/gr.137091.111)
- Sebastian
Will, Christina Schmiedl, Milad Miladi,
Mathias Möhl, and Rolf Backofen.
SPARSE: Quadratic Time Simultaneous Alignment and Folding of
RNAs Without Sequence-Based Heuristics.
In Minghua Deng, Rui Jiang, Fengzhu
Sun, and Xuegong Zhang, editors, Proceedings of the
17th International Conference on Research in Computational Molecular Biology
(RECOMB 2013), volume 7821 of LNCS, pages 289–290.
Springer Berlin Heidelberg, 2013.
(doi:10.1007/978-3-642-37195-0_28)
- Fabian
Amman, Stephan H. Bernhart, Gero Doose,
Ivo L. Hofacker, Jing Qin,
Peter F. Stadler, and Sebastian Will.
The Trouble with Long-Range Base Pairs in Rna Folding.
In João C. Setubal and Nalvo F. Almeida,
editors, Advances in Bioinformatics and Computational Biology,
volume 8213 of Lecture Notes in Computer Science, pages 1–11.
Springer International Publishing, 2013.
(doi:10.1007/978-3-319-02624-4_1)
- Sebastian
Will, Tejal Joshi, Ivo L. Hofacker,
Peter F. Stadler, and Rolf Backofen.
LocARNA-P: Accurate boundary prediction and improved detection of
structural RNAs.
RNA, 18(5):900–14, 2012.
(doi:10.1261/rna.029041.111)
- Stefan
Washietl, Sebastian Will, David A. Hendrix,
Loyal A. Goff, John L. Rinn,
Bonnie Berger, and Manolis Kellis.
Computational analysis of noncoding RNAs.
Wiley Interdiscip Rev RNA, 3(6):759–78, 2012.
(doi:10.1002/wrna.1134)
- Dragos A.
Sorescu, Mathias Möhl, Martin Mann,
Rolf Backofen, and Sebastian Will.
CARNA - alignment of RNA structure ensembles.
Nucleic Acids Res, 40(W1):W49–W53, 2012.
DAS, MMö, and MMa contributed equally to this work.
(doi:10.1093/nar/gks491)
- Christina
Schmiedl, Mathias Möhl, Steffen Heyne,
Mika Amit, Gad M. Landau,
Sebastian Will, and Rolf Backofen.
Exact Pattern Matching for RNA Structure Ensembles.
In Benny Chor, editor, Proceedings of the 16th
International Conference on Research in Computational Molecular Biology
(RECOMB 2012), volume 7262 of LNCS, pages 245–260.
Springer-Verlag, 2012.
(doi:10.1007/978-3-642-29627-7_27)
- Mika
Amit, Rolf Backofen, Steffen Heyne,
Gad M. Landau, Mathias Möhl,
Christina Schmiedl, and Sebastian Will.
Local Exact Pattern Matching for Non-fixed RNA Structures.
In Juha Kärkkäinen and Jens Stoye,
editors, Proceedings of the 23th Annual Symposium on Combinatorial
Pattern Matching (CPM 2012), volume 7354 of LNCS, pages
306–320. Springer-Verlag, 2012.
(doi:10.1007/978-3-642-31265-6_25)
- Sebastian
Will, Michael Yu, and Bonnie Berger.
Structure-based Whole Genome Realignment Reveals Many Novel
Non-coding RNAs.
In Benny Chor, editor, Proceedings of the 16th
International Conference on Research in Computational Molecular Biology
(RECOMB 2012), volume 7262 of LNCS, page 341.
Springer-Verlag, 2012.
(doi:10.1007/978-3-642-29627-7_35)
- Fernando
Meyer, Stefan Kurtz, Rolf Backofen,
Sebastian Will, and Michael Beckstette.
Structator: fast index-based search for RNA sequence-structure patterns.
BMC Bioinformatics, 12(1):214, 2011.
(doi:10.1186/1471-2105-12-214)
- Sushmita
Roy, Jason Ernst, Peter V. Kharchenko,
Pouya Kheradpour, Nicolas Negre,
Matthew L. Eaton, Jane M. Landolin,
Christopher A. Bristow, Lijia Ma,
Michael F. Lin, Stefan Washietl,
Bradley I. Arshinoff, Ferhat Ay,
Patrick E. Meyer, Nicolas Robine,
Nicole L. Washington, Luisa Di Stefano,
Eugene Berezikov, Christopher D. Brown,
Rogerio Candeias, Joseph W. Carlson,
Adrian Carr, Irwin Jungreis,
Daniel Marbach, Rachel Sealfon,
Michael Y. Tolstorukov, Sebastian Will,
Artyom A. Alekseyenko, Carlo Artieri,
Benjamin W. Booth, Angela N. Brooks,
Qi Dai, Carrie A. Davis,
Michael O. Duff, Xin Feng,
Andrey A. Gorchakov, Tingting Gu,
Jorja G. Henikoff, Philipp Kapranov,
Renhua Li, Heather K. MacAlpine,
John Malone, Aki Minoda, Jared
Nordman, Katsutomo Okamura, Marc Perry,
Sara K. Powell, Nicole C. Riddle,
Akiko Sakai, Anastasia Samsonova,
Jeremy E. Sandler, Yuri B. Schwartz,
Noa Sher, Rebecca Spokony, David
Sturgill, Marijke van Baren, Kenneth H. Wan,
Li Yang, Charles Yu, Elise
Feingold, Peter Good, Mark Guyer,
Rebecca Lowdon, Kami Ahmad,
Justen Andrews, Bonnie Berger,
Steven E. Brenner, Michael R. Brent,
Lucy Cherbas, Sarah C. R. Elgin,
Thomas R. Gingeras, Robert Grossman,
Roger A. Hoskins, Thomas C. Kaufman,
William Kent, Mitzi I. Kuroda,
Terry Orr-Weaver, Norbert Perrimon,
Vincenzo Pirrotta, James W. Posakony,
Bing Ren, Steven Russell, Peter
Cherbas, Brenton R. Graveley, Suzanna Lewis,
Gos Micklem, Brian Oliver,
Peter J. Park, Susan E. Celniker,
Steven Henikoff, Gary H. Karpen,
Eric C. Lai, David M. MacAlpine,
Lincoln D. Stein, Kevin P. White, and
Manolis Kellis.
Identification of functional elements and regulatory circuits by Drosophila
modENCODE.
Science, 330(6012):1787–97, 2010.
(doi:10.1126/science.1198374)
- Mathias
Möhl, Raheleh Salari, Sebastian Will,
Rolf Backofen, and S. Cenk Sahinalp.
Sparsification of RNA structure prediction including pseudoknots.
Algorithms Mol Biol, 5(1):39, 2010.
(doi:10.1186/1748-7188-5-39)
- Mathias
Möhl, Raheleh Salari, Sebastian Will,
Rolf Backofen, and S. Cenk Sahinalp.
Sparsification of RNA Structure Prediction Including Pseudoknots.
In Vincent Moulton and Mona Singh, editors,
Proc. of the 10th Workshop on Algorithms in Bioinformatics
(WABI), volume 6293 of Lecture Notes in Computer
Science, pages 40–51. Springer Berlin / Heidelberg, 2010.
(doi:10.1007/978-3-642-15294-8_4)
- Alessandro Dal
Palu, Mathias Möhl, and Sebastian Will.
A propagator for Maximum Weight String Alignment with Arbitrary
Pairwise Dependencies.
In Proceedings of the 16th International Conference on Principles and
Practice of Constraint Programming (CP-2010), pages 167–175, 2010.
(doi:10.1007/978-3-642-15396-9_16)
- Cameron
Smith, Steffen Heyne, Andreas S. Richter,
Sebastian Will, and Rolf Backofen.
Freiburg RNA Tools: a web server integrating IntaRNA, ExpaRNA
and LocARNA.
Nucleic Acids Res, 38 Suppl:W373–7, 2010.
(doi:10.1093/nar/gkq316)
- Raheleh
Salari, Mathias Möhl, Sebastian Will,
S. Cenk Sahinalp, and Rolf Backofen.
Time and Space Efficient RNA-RNA Interaction Prediction via
Sparse Folding.
In Bonnie Berger, editor, Proc. of RECOMB 2010,
volume 6044 of Lecture Notes in Computer Science, pages
473–490. Springer-Verlag Berlin Heidelberg, 2010.
(doi:10.1007/978-3-642-12683-3_31)
- Mathias
Möhl, Sebastian Will, and Rolf Backofen.
Lifting prediction to alignment of RNA pseudoknots.
J Comput Biol, 17(3):429–42, 2010.
(doi:10.1089/cmb.2009.0168)
- Steffen
Heyne, Sebastian Will, Michael Beckstette, and
Rolf Backofen.
Lightweight Comparison of RNAs Based on Exact
Sequence-Structure Matches.
Bioinformatics, 25(16):2095–2102, 2009.
(doi:10.1093/bioinformatics/btp065)
- Martin Mann,
Cameron Smith, Mohamad Rabbath,
Marlien Edwards, Sebastian Will, and
Rolf Backofen.
CPSP-web-tools: a server for 3D lattice protein studies.
Bioinformatics, 25(5):676–7, 2009.
(doi:10.1093/bioinformatics/btp034)
- Jérôme
Waldispühl, Charles W. O'Donnell, Sebastian
Will, Srinivas Devadas, Rolf Backofen, and
Bonnie Berger.
Simultaneous Alignment and Folding of Protein Sequences.
In Serafim Batzoglou, editor, Proc.of the 13th Annual
International Conferences on Computational Molecular Biology
(RECOMB'09), volume 5541 of LNBI, pages 339–355.
Springer, 2009.
- Mathias
Möhl, Sebastian Will, and Rolf Backofen.
Lifting Prediction to Alignment of RNA Pseudoknots.
In Serafim Batzoglou, editor, Proc. of the 13th Annual
International Conferences on Computational Molecular Biology
(RECOMB'09), volume 5541 of LNBI, pages 285–301.
Springer, 2009.
- Stephan H.
Bernhart, Ivo L. Hofacker, Sebastian Will,
Andreas R. Gruber, and Peter F. Stadler.
RNAalifold: improved consensus structure prediction for RNA alignments.
BMC Bioinformatics, 9:474, 2008.
(doi:10.1186/1471-2105-9-474)
- Mathias
Möhl, Sebastian Will, and Rolf Backofen.
Fixed Parameter Tractable Alignment of RNA Structures Including
Arbitrary Pseudoknots.
In Proceedings of the 19th Annual Symposium on Combinatorial Pattern
Matching (CPM 2008), LNCS, pages 69–81. Springer-Verlag, 2008.
- Sebastian
Will, Anke Busch, and Rolf Backofen.
Efficient Sequence Alignment with Side-Constraints by Cluster
Tree Elimination.
Constraints Journal, 13(1):110–129, 2008.
(doi:10.1007/s10601-007-9032-x)
- Wolfgang
Otto, Sebastian Will, and Rolf Backofen.
Structure Local Multiple Alignment of RNA.
In Proceedings of German Conference on Bioinformatics (GCB'2008),
volume P-136 of Lecture Notes in Informatics (LNI), pages
178–188. Gesellschaft für Informatik (GI), 2008.
- Steffen
Heyne, Sebastian Will, Michael Beckstette, and
Rolf Backofen.
Lightweight comparison of RNAs based on exact sequence-structure matches.
In Proceedings of the German Conference on Bioinformatics
(GCB'2008), volume P-136 of Lecture Notes in Informatics
(LNI), pages 189–198. Gesellschaft für Informatik (GI),
2008.
- Martin
Mann, Sebastian Will, and Rolf Backofen.
CPSP-tools - Exact and Complete Algorithms for High-throughput 3D
Lattice Protein Studies.
BMC Bioinformatics, 9:230, 2008.
(doi:10.1186/1471-2105-9-230)
- Sebastian
Will, Kristin Reiche, Ivo L. Hofacker,
Peter F. Stadler, and Rolf Backofen.
Inferring Non-Coding RNA Families and Classes by Means of
Genome-Scale Structure-Based Clustering.
PLoS Comput Biol, 3(4):e65, 2007.
(doi:10.1371/journal.pcbi.0030065)
- Athanasius F.
Bompfünewerer, Rolf Backofen, Stephan H.
Bernhart, Jana Hertel, Ivo L. Hofacker,
Peter F. Stadler, and Sebastian Will.
Variations on RNA folding and alignment: lessons from Benasque.
Journal of Mathematical Biology, 56(1-2):129–144, 2008.
(doi:10.1007/s00285-007-0107-5)
- Athanasius
F. Bompfünewerer Consortium, Rolf Backofen,
Stephan H. Bernhart, Christoph Flamm,
Claudia Fried, Guido Fritzsch,
Jörg Hackermüller, Jana Hertel,
Ivo L. Hofacker, Kristin Missal,
Axel Mosig, Sonja J. Prohaska,
Dominic Rose, Peter F. Stadler,
Andrea Tanzer, Stefan Washietl, and
Sebastian Will.
RNAs everywhere: genome-wide annotation of structured RNAs.
J Exp Zoolog B Mol Dev Evol, 308B(1):1–25, 2007.
(doi:10.1002/jez.b.21130)
- Alessandro Dal
Palù, Agostino Dovier, Fran c cois
Fages, and Sebastian Will.
Constraint-based Methods for Bioinformatics.
In Frédéric Benhamou, Narendra Jussien,
and Barry O'Sullivan, editors, Trends in Constraint
Programming, chapter 6, pages 129–150. ISTE, London, UK, may
2007.
- Martin Mann,
Sebastian Will, and Rolf Backofen.
The Energy Landscape Library - A platform for Generic Algorithms.
In BIRD'07 - 1st international Conference on Bioinformatics Research and
Development, volume 217, pages 83–86. Oesterreichische Computer
Gesellschaft, 2007.
- Rolf
Backofen and Sebastian Will.
A constraint-Based Approach to Fast and Exact Structure
Prediction in Three-Dimensional Protein Models.
Journal of Constraints, 11(1):5–30, January 2006.
(doi:10.1007/s10601-006-6848-8)
- Michael T.
Wolfinger, Sebastian Will, Ivo L. Hofacker,
Rolf Backofen, and Peter F. Stadler.
Exploring the lower part of discrete polymer model energy landscapes.
Europhysics Letters, 74(4):725–732, 2006.
(doi:10.1209/epl/i2005-10577-0)
- Anke
Busch, Sebastian Will, and Rolf Backofen.
SECISDesign: a server to design SECIS-elements within the coding
sequence.
Bioinformatics, 21(15):3312–3, 2005.
- Rolf
Backofen and Sebastian Will.
Local Sequence-Structure Motifs in RNA.
Journal of Bioinformatics and Computational Biology (JBCB),
2(4):681–698, 2004.
- Sebastian
Will and Rolf Backofen.
Breaking of Partial Symmetries in the Photo and Alignment Problem.
In Barbara Smith, Ian Gent, and
Warwick Harvey, editors, Proceedings of the Third
International Workshop on Symmetry in Constraint Satisfaction Problems
(SymCon 2003), pages 187–194, 2003.
- Rolf
Backofen and Sebastian Will.
A constraint-Based Approach to Structure Prediction for Simplified
Protein Models that Outperforms Other Existing Methods.
In Proceedings of the 19th International Conference on Logic Programming
(ICLP 2003), volume 2916 of Lecture Notes in Computer
Science, pages 49–71. Springer, 2003.
- Rolf
Backofen and Sebastian Will.
Excluding symmetries in constraint-based search.
Constraints, 7(3):333–349, 2002.
- Sebastian Will.
Constraint-based Hydrophobic Core Construction for Protein
Structure Prediction in the Face-Centered-Cubic Lattice.
In Russ B. Altman, A. Keith Dunker,
Lawrence Hunter, and Teri E. Klein, editors,
Proceedings of the Pacific Symposium on Biocomputing 2002 (PSB
2002), pages 661–672, Singapore, 2002. World Scientific Publishing
Co. Pte. Ltd.
- Rolf Backofen and
Sebastian Will.
Optimally Compact Finite Sphere Packings — Hydrophobic Cores in
the FCC.
In Proc. of the 12th Annual Symposium on Combinatorial Pattern Matching
(CPM2001), volume 2089 of Lecture Notes in Computer
Science, pages 257–272, Berlin, 2001. Springer-Verlag.
- Rolf Backofen and
Sebastian Will.
Fast, Constraint-based Threading of HP-Sequences to Hydrophobic
Cores.
In Proc. of the 7th International Conference on Principle and Practice of
Constraint Programming (CP'2001), volume 2239 of Lecture Notes
in Computer Science, pages 494–508, Berlin, 2001.
Springer-Verlag.
- Rolf
Backofen, Sebastian Will, and Peter Clote.
Algorithmic approach to quantifying the hydrophobic force contribution in
protein folding.
In Russ B. Altman, A. Keith Dunker,
Lawrence Hunter, and Teri E. Klein, editors,
Proceedings of the Pacific Symposium on Biocomputing (PSB 2000),
volume 5, pages 92–103, 2000.
- Slim
Abdennadher, Matthias Saft, and Sebastian
Will.
Classroom Assignment using Constraint Logic Programming.
In Proceedings of the Second International Conference and Exhibition on
The Practical Application of Constraint Technologies and Logic Programming
(PACLP 2000), 2000.
- Rolf
Backofen, Sebastian Will, and Erich
Bornberg-Bauer.
Application of Constraint Programming Techniques for Structure
Prediction of Lattice Proteins with Extended Alphabets.
Bioinformatics, 15(3):234–242, 1999.
- Rolf Backofen and
Sebastian Will.
Excluding Symmetries in Constraint-Based Search.
In Joxan Jaffar, editor, Proceedings of the 5th
International Conference on Principle and Practice of Constraint Programming
(CP'99), volume 1713 of Lecture Notes in Computer
Science, pages 73–87, Berlin, 1999. Springer-Verlag.
- Rolf Backofen,
Sebastian Will, and Peter Clote.
Algorithmic approach to quantifying the hydrophobic force contribution in
protein folding.
In Proceedings of the German Conference on Bioinformatics
(GCB'99), pages 93–106, 1999.
http://www.bioinfo.de/isb/gcb99.
- Rolf Backofen and
Sebastian Will.
Structure Prediction in an HP-type Lattice with an Extended
Alphabet.
In Proc of German Conference on Bioinformatics (GCB'98),
1998.