Relatives identification

Taxonomic classification

Taxonomic node
root
cellular organisms
Bacteria
Firmicutes
Clostridia
Clostridiales
Clostridiaceae
Clostridium

Neighbourhood

Neighbourhood tree
[] marks nearest species used for classification

Homology based protein prediction

Used proteins from

Related species
Clostridium_difficile_630 (s159s)

Derived features

Direct annotated proteins3084
Predicted ORFs2151
Min. length39 amino acids
Max. length2710 amino acids
Start-Codons
TTG15.56%
ATT0.19%
CTG0.03%
ATG71.69%
GTG 12.52%
Stop-Codons
TAA69.46%
TAG25.23%
TGA 5.32%

Estimated Shine-Dalgarno profile

Estimated shine-dalgarno
Motif found in 905 of 5229 sequences
(1|13.76|20)

Estimated promoter profile (-10 box)

Estimated promotor
Motif found in 4876 of 5228 sequences
(1|70.42|195)

Terminator data

Estimated minimal score (max. 25% false positives)73
Found: 914
Average score: 93.15

Additional data

Reference protein blast

Reference proteinBlast hits
30S ribosomal protein S17:Alkaliphilus metalliredigens QYMF (s25s)
30S ribosomal protein S12:Clostridium difficile 630 (s159s)
30S ribosomal protein S7:Clostridium difficile 630 (s159s)
50S ribosomal protein L1:Clostridium difficile 630 (s159s)
30S ribosomal protein S3:Clostridium difficile 630 (s159s)
30S ribosomal protein S19:Clostridium difficile 630 (s159s)
30S ribosomal protein S2:Clostridium difficile 630 (s159s)
30S ribosomal protein S11:Clostridium difficile 630 (s159s)
50S ribosomal protein L6:Clostridium difficile 630 (s159s)
30S ribosomal protein S5:Clostridium difficile 630 (s159s)
phenylalanyl-tRNA synthetase alpha chain:Clostridium difficile 630 (s159s)
50S ribosomal protein L22:Clostridium difficile 630 (s159s)
30S ribosomal protein S13:Clostridium difficile 630 (s159s)
30S ribosomal protein S10:Clostridium difficile 630 (s159s)
transcription elongation/termination factor NusA:Clostridium difficile 630 (s159s)
50S ribosomal protein L23:Clostridium difficile 630 (s159s)
50S ribosomal protein L11:Clostridium difficile 630 (s159s)
30S ribosomal protein S8:Clostridium difficile 630 (s159s)
30S ribosomal protein S4:Clostridium difficile 630 (s159s)
50S ribosomal protein L2:Clostridium difficile 630 (s159s)
peptidase M22, O-sialoglycoprotein endopeptidase:Clostridium difficile 630 (s159s)
50S ribosomal protein L3:Clostridium difficile 630 (s159s)
seryl-tRNA synthetase:Clostridium difficile 630 (s159s)
arginyl-tRNA synthetase:Clostridium difficile 630 (s159s)
50S ribosomal protein L14:Clostridium difficile 630 (s159s)
preprotein translocase, SecY subunit:Clostridium difficile 630 (s159s)
50S ribosomal protein L5:Clostridium difficile 630 (s159s)

Files


Genome: NC_013315.fna
Original annotation: NC_013315.gff
GenBank: NC_013315.gbk

Automatic annotation: pipeline.gff
Predicted promoters: promoter_hits.fna
Predicted SDs: SD_hits.fna
Predicted terminators: terminator_hits.fna

Run

Started at Tue Dec 8 00:26:16 2009 finished at Tue Dec 8 00:51:26 2009
NC_013315.fna, 7 threads, none (xxx) excluded