Konstantin Klemm Currently at IFISC phone +34 971 25 98 30 Bioinformatics University of Leipzig Hartelstr. 16-18 04107 Leipzig Germany email: klemm@bioinf.uni-leipzig.de

Research interests:

• Complex Networks
• Dynamics of Genetic Regulation
• Energy landscapes
• Sociophysics
• Unsupervised and Reinforcement Learning
• Neuroscience

submitted papers

• Fakhteh Ghanbarnejad, Konstantin Klemm,
  Impact of individual nodes in Boolean network dynamics,
  arXiv:1111.5334 [q-bio.MN]

• Stephanie Keller-Schmidt, Konstantin Klemm
  A model of macro-evolution as a branching process based on innovations,
  arXiv:1111.2608 [q-bio.PE]

• Konstantin Klemm, Anita Mehta, Peter F. Stadler,
  Landscape encoding: faster optimization in larger spaces,
  arXiv:1104.5024v1 [cond-mat.dis-nn]

• Stephanie Keller-Schmidt, Murat Tugrul, Victor M. Eguiluz, Emilio Hernandez-Garcia, Konstantin Klemm,
  An Age Dependent Branching Model for Macroevolution,
  arXiv:1012.3298v1 [q-bio.PE]

• Konstantin Klemm, M. Angeles Serrano, Victor M. Eguiluz, Maxi San Miguel,
  A measure of individual role in collective dynamics: spreading at criticality,
  arXiv:1002.4042 [physics.soc-ph]

• Stephanie Keller-Schmidt, Nicolas Wieseke, Konstantin Klemm, Martin Middendorf,
  Evaluation of Host Parasite Reconciliation Methods using a new Approach for Cophylogeny Generation,
  working paper BIONF 11-013

• Gunnar Boldhaus, Florian Greil, Konstantin Klemm,
  Prediction of lethal and synthetically lethal knock-outs in regulatory networks,
  arXiv:1108.6062 [q-bio.MN]

papers in press

published papers

• Fakhteh Ghanbarnejad, Konstantin Klemm,
  Stability of Boolean and continuous dynamics,
  Physical Review Letters 107, 188701 (2011), arXiv:1103.4490 [physics.bio-ph]

• Thomas Skodawessely, Konstantin Klemm,
  Finding attractors in asynchronous Boolean dynamics,
  Advances in Complex Systems 14, 439 (2011), arXiv:1008.3851v1 [cond-mat.dis-nn]

• Martin Mann, Konstantin Klemm,
  Efficient exploration of energy landscapes,
  Physical Review E 83, 011113 (2011), arXiv:0910.2559 [q-bio.MM]

• Gunnar Boldhaus, Konstantin Klemm,
  Regulatory networks and connected components of the neutral space,
  Eur. Phys. J. B 77, 233 (2010), arXiv:0904.4843v1 [q-bio.MN]

• Gunnar Boldhaus, Nils Bertschinger, Johannes Rauh, Eckehard Olbrich, Konstantin Klemm,
  Robustness of Boolean dynamics under knockouts,
  Phys. Rev. E 82, 021916 (2010), arXiv:1003.0104 [q-bio.MN]

• Christoph Flamm, Alexander Ullrich, Heinz Ekker, Martin Mann, Daniel Högerl, Markus Rohrschneider, Sebastian Sauer, Gerik Scheuermann, Konstantin Klemm, Ivo L. Hofacker, Peter F. Stadler,
  Evolution of Metabolic Networks: A Computational Framework,
  J. Syst. Chem 1, 4 (2010).

• Markus Riester, Peter F. Stadler, Konstantin Klemm,
  Reconstruction of pedigrees in clonal plant populations,
  Theoretical Population Biology 78, 109 (2010)..

• Emilio Hernandez-Garcia, Murat Tugrul, E. Alejandro Herrada, Victor M. Eguiluz, Konstantin Klemm,
  Simple models for scaling in phylogenetic trees,
  International Journal of Bifurcation and Chaos 20, 805-811 (2010). arxiv:0810.3877

• Philipp-Jens Ostermeier, Marc Hellmuth, Konstantin Klemm, Josef Leydold, Peter F. Stadler,
  A Note on Quasi-Robust Cycle Bases,
  Ars Mathematica Contemporanea 2, 231-240 (2009). Open access at publisher's page.

• M. Angeles Serrano, Konstantin Klemm, Federico Vazquez, Victor M. Eguiluz, Maxi San Miguel,
  Conservation laws for voter-like models on random directed networks,
  JSTAT (2009) P10024, arXiv:0902.1769 [cond-mat.dis-nn]

• Markus Riester, Peter F. Stadler, Konstantin Klemm,
  FRANz: Reconstruction of wild multi-generation pedigrees,
  Bioinformatics 25, 2134 (2009), Software
  proceedings version (GCB2008): Lecture Notes in Informatics P-136, 168 (2008).

• Konstantin Klemm, Peter F. Stadler,
  A Note on Fundamental, Non-fundamental, and Robust Cycle Bases,
  Discrete Appl. Math. 157, 2432 (2009), SFI Working Paper 07-08-031

• E. Alejandro Herrada, Claudio J. Tessone, Konstantin Klemm, Victor M. Eguiluz, Emilio Hernandez-Garcia, Carlos M. Duarte,
  Universal scaling in the branching of the Tree of Life,
  PLoS ONE 3(7): e2757 (2008), arxiv:0807.4042 [q-bio.PE].

• Konstantin Klemm, Christoph Flamm, Peter F. Stadler,
  Funnels in Energy Landscapes,
  Eur. Phys. J. B 63, 387 (2008), arXiv:0707.3719v1 [q-bio.BM]

• J. C. Gonzalez-Avella, M. G. Cosenza, K. Klemm, V. M. Eguiluz and M. San Miguel,
  Information Feedback and Mass Media Effects in Cultural Dynamics,
  Journal of Artificial Societies and Social Simulation 10, (3) 9 (2007).

• K. Klemm, V. M. Eguiluz, M. San Miguel,
  Analysis of attachment models for directory and file trees,
  Physica D 224, 149 (2006)

• J. C. Gonzalez-Avella, V. M. Eguiluz, M. G. Cosenza, K. Klemm, J. L. Herrera, M. San Miguel,
  Local versus global interactions in nonequilibrium transitions: A model of social dynamics,
  Phys. Rev. E 73, 046119 (2006), cond-mat/0601340

• Konstantin Klemm, Peter F. Stadler,
  Statistics of cycles in large networks,
  Phys. Rev. E 73, 025101(R) (2006), cond-mat/0506493

• Konstantin Klemm, Stefan Bornholdt,
  Topology of biological networks and reliability of information processing,
  Proc. Natl. Acad. Sci. USA 102, 18414 (2005), q-bio/0409022

• Konstantin Klemm, Stefan Bornholdt,
  Stable and unstable attractors in Boolean networks,
  Phys. Rev. E 72, 055101(R) (2005), cond-mat/0411102

• Maxi San Miguel, Victor M. Eguiluz, Raul Toral, Konstantin Klemm,
  Binary and Multivariate Stochastic Models of Consensus Formation,
  Computing in Science and Engineering 7, 67 (2005), physics/0507201

• Konstantin Klemm, Victor M. Eguiluz, Maxi San Miguel,
  Scaling in the structure of directory trees in a computer cluster,
  Phys. Rev. Lett. 95, 128701 (2005), cond-mat/0403239

• Konstantin Klemm, Victor M. Eguiluz, Raul Toral, Maxi San Miguel,
  Globalization, polarization and cultural drift,
  Journal of Economic Dynamics and Control 29, 321 (2005)

• Konstantin Klemm, Victor M. Eguiluz, Raul Toral, Maxi San Miguel,
  Role of dimensionality in Axelrod's model for the dissemination of culture,
  Physica A 327, 1 (2003)

• Victor M. Eguiluz, Emilio Hernandez-Garcia, Oreste Piro, Konstantin Klemm
  Effective dimensions and percolation in hierarchically structured scale-free networks,
  Phys. Rev. E 68, 055102(R) (2003), cond-mat/0302515

• Konstantin Klemm, Victor M. Eguiluz, Raul Toral, Maxi San Miguel,
  Global culture: A noise-induced transition in finite systems,
  Phys. Rev. E 67, 045101(R) (2003), cond-mat/0205188
  related material

• Konstantin Klemm, Victor M. Eguiluz, Raul Toral, Maxi San Miguel,
  Nonequilibrium transitions in complex networks: a model of social interaction,
  Phys. Rev. E 67, 026120 (2003), cond-mat/0210542
  related material

• Victor M. Eguiluz, Konstantin Klemm,
  Epidemic threshold in structured scale-free networks,
  Phys. Rev. Lett. 89, 108701 (2002), cond-mat/0205439

• Konstantin Klemm, Victor M. Eguiluz,
  Growing scale-free networks with small-world behavior,
  Phys. Rev. E 65, 057102 (2002), cond-mat/0107607

• Konstantin Klemm, Victor M. Eguiluz,
  Highly clustered scale-free networks,
  Phys. Rev. E 65, 036123 (2002), cond-mat/0107606
  related article in Technology Research News

• Konstantin Klemm, Preben Alstrøm,
  Emergence of memory,
  Europhys. Lett. 59, 662 (2002), cond-mat/0211122

• Konstantin Klemm, Stefan Bornholdt, and Heinz Georg Schuster,
  Beyond Hebb: XOR and biological learning,
  Phys. Rev. Lett. 84, 3013-3016 (2000), adap-org/9909005

miscellaneous

• Konstantin Klemm, Victor M. Eguiluz, Raul Toral, Maxi San Miguel,
  Cultural transmission and optimization dynamics,
  cond-mat/0210173

• Konstantin Klemm, Stefan Bornholdt,
  Robust gene regulation: Deterministic dynamics from asynchronous networks with delay,
  q-bio/0309013