Coverage is 36.0% in 2334 parts with average length 553
RNAcode: sum length genes 427380 299 regions
13% of CDS surface is retrieved
blautia
Coverage is 78.7% in 17301 parts with average length 284 RNAcode: sum length genes 4686183 5408 regions 85% of CDS surface is retrieved
clostri
Coverage is 82.1% in 22567 parts with average length 170 RNAcode length genes 3258864 in 4409 regions 68% of CDS surface is retrieved
bifi
Coverage is 87.7% in 5628 parts with average length 351 RNAcode: sum length genes 1904109 in 2052 regions 98% of CDS surface is retrieved
bact
Coverage is 80.4% in 13074 parts with average length 387 RNAcode: sum length genes 4872240 in 4755 regions 85% of CDS surface is retrieved
anaero
Coverage is 62.6% in 9643 parts with average length 233 RNAcode: sum length genes 2270853 in 2749 regions 70% of CDS surface is retrieved
ery
Coverage is 74.9% in 12757 parts with average length 190 RNAcode: sum length genes 2342850 in 3015 regions 81% of CDS surface is retrieved
ecoli
Coverage is 94.9% in 8641 parts with average length 509 RNAcode: sum length genes 4018422 in 4508 regions 97% of CDS surface is retrieved
lacto
TODO Coverage is 91.8% in 10840 parts with average length 275 RNAcode: sum length genes 2628285 in 3240 regions 44% of CDS surface is retrieved
1121114
Coverage is 24.0% in 7801 parts with average length 184
1316931
Coverage is 46.8% in 12153 parts with average length 174
206672
Coverage is 54.5% in 10264 parts with average length 119
226186
Coverage is 40.1% in 10992 parts with average length 229
411490
Coverage is 34.1% in 6709 parts with average length 183
445974
Coverage is 51.3% in 7985 parts with average length 206
511145
Coverage is 75.2% in 10914 parts with average length 319
525338
Coverage is 42.8% in 5641 parts with average length 242blautia
Coverage is 34.2% in 6085 parts with average length 350
clostri
Coverage is 51.1% in 9093 parts with average length 264
bifi
Coverage is 67.3% in 3733 parts with average length 406
bact
Coverage is 48.6% in 7868 parts with average length 389
anaero
Coverage is 44.5% in 4115 parts with average length 388
ery
Coverage is 45.6% in 4637 parts with average length 319
ecoli
Coverage is 78.1% in 6511 parts with average length 556
lacto
Coverage is 47.6% in 3665 parts with average length 422
blautia
Coverage is 21.0% in 4127 parts with average length 317
clostri
Coverage is 32.1% in 5371 parts with average length 280
bifi
Coverage is 53.6% in 3581 parts with average length 337
bact
Coverage is 32.0% in 5198 parts with average length 388
anaero
Coverage is 34.3% in 4126 parts with average length 298
ery
Coverage is 29.3% in 3648 parts with average length 260
ecoli
Coverage is 65.3% in 5020 parts with average length 604
lacto
Coverage is 41.2% in 3468 parts with average length 385The selection of genomes was hold constant. Always closest selection.
Must for each species one by one. First genome alligment and than rna code, each takes 1/2 day.
Results are printed in
20
Coverage is 57.9% in 11381 parts with average length 238
7% of CDS surface is retrieved
25
Coverage is 59.8% in 13049 parts with average length 215
6% of CDS surface is retrieved
30
Coverage is 62.8% in 14344 parts with average length 205
6% of CDS surface is retrieved
35
Coverage is 61.2% in 14763 parts with average length 194
5% of CDS surface is retrieved
40
Coverage is 60.6% in 15250 parts with average length 186
6% of CDS surface is retrieved
45
Coverage is 59.9% in 15772 parts with average length 178
5% of CDS surface is retrieved
50
Coverage is 59.1% in 16066 parts with average length 172
4% of CDS surface is retrieved
20
Coverage is 80.1% in 7580 parts with average length 490
27% of CDS surface is retrieved
25
Coverage is 80.7% in 8702 parts with average length 430
25% of CDS surface is retrieved
30
Coverage is 80.8% in 9335 parts with average length 401
24% of CDS surface is retrieved
35
Coverage is 80.8% in 10081 parts with average length 371
22% of CDS surface is retrieved
40
Coverage is 80.4% in 10761 parts with average length 346
20% of CDS surface is retrieved
45
Coverage is 80.6% in 10901 parts with average length 343
19% of CDS surface is retrieved
50
Coverage is 80.1% in 11691 parts with average length 318
17% of CDS surface is retrieved
20
Coverage is 47.8% in 5922 parts with average length 261
4% of CDS surface is retrieved
25
Coverage is 53.6% in 7484 parts with average length 232
4% of CDS surface is retrieved
30
Coverage is 57.4% in 8401 parts with average length 222
4% of CDS surface is retrieved
35
Coverage is 56.8% in 8850 parts with average length 208
4% of CDS surface is retrieved
40
Coverage is 56.8% in 9308 parts with average length 198
3% of CDS surface is retrieved
45
Coverage is 56.7% in 9768 parts with average length 188
3% of CDS surface is retrieved
50
Coverage is 56.2% in 9983 parts with average length 182
3% of CDS surface is retrieved
20
Coverage is 53.0% in 4446 parts with average length 387
7% of CDS surface is retrieved
25
Coverage is 55.1% in 5025 parts with average length 356
7% of CDS surface is retrieved
30
Coverage is 57.2% in 5438 parts with average length 342
7% of CDS surface is retrieved
35
Coverage is 58.5% in 5971 parts with average length 318
6% of CDS surface is retrieved
40
Coverage is 61.4% in 6609 parts with average length 302
6% of CDS surface is retrieved
45
Coverage is 61.3% in 7120 parts with average length 279
6% of CDS surface is retrieved
50
Coverage is 61.6% in 7380 parts with average length 271
6% of CDS surface is retrieved
20
Coverage is 40.8% in 8777 parts with average length 290
7% of CDS surface is retrieved
25
Coverage is 42.5% in 10517 parts with average length 252
6% of CDS surface is retrieved
30
Coverage is 44.8% in 11973 parts with average length 233
6% of CDS surface is retrieved
35
Coverage is 46.2% in 13006 parts with average length 221
5% of CDS surface is retrieved
40
Coverage is 47.0% in 14178 parts with average length 207
4% of CDS surface is retrieved
45
Coverage is 47.9% in 15028 parts with average length 198
5% of CDS surface is retrieved
50
Coverage is 48.8% in 16453 parts with average length 185
4% of CDS surface is retrieved
The selection of genomes was hold constant. Always closest selection.
Must for each species one by one. First genome alligment and than rna code, each takes 1/2 day.
Results are printed in
Annotation NCBI length: 4730133 (nuc)
8
Coverage is 39.9% in 4276 parts with average length 437
RNAcode: sum length genes 519129 387 regions
11% of CDS surface is retrieved
11
Coverage is 46.8% in 5928 parts with average length 370
RNAcode: sum length genes 568983 420 regions
12% of CDS surface is retrieved
14
Coverage is 50.2% in 8231 parts with average length 286
RNAcode: sum length genes 323622 231 regions
7% of CDS surface is retrieved
17
Coverage is 52.9% in 10251 parts with average length 242
RNAcode: sum length genes 284133 199 regions
6% of CDS surface is retrieved
Annotation NCBI length: 4081934 (nuc)
8
Coverage is 68.7% in 4112 parts with average length 775
RNAcode: sum length genes 1299741 (nuc) in 993 regions
32% of CDS surface is retrieved
11
Genome coverage is 70.4% in 5161 parts with average length 633
RNAcode: sum length genes 1198050 (nuc) in 850 regions
29% of CDS surface is retrieved
14
Genome coverage is 77.8% in 6337 parts with average length 569
RNAcode: sum length genes 1212138 (nuc) in 870 regions
30% of CDS surface is retrieved
17
Genome coverage is 78.7% in 6969 parts with average length 524
RNAcode: sum length genes 1137141 (nuc) in 823 regions
28% of CDS surface is retrieved
Annotation NCBI length: 2851791 (nuc)
8
Coverage is 30.0% in 2292 parts with average length 424
RNAcode: sum length genes 126426 80 regions
4% of CDS surface is retrieved
11
Coverage is 33.6% in 3139 parts with average length 348
RNAcode: sum length genes 103200 66 regions
4% of CDS surface is retrieved
14
Coverage is 41.7% in 4328 parts with average length 313
RNAcode: sum length genes 104523 70 regions
4% of CDS surface is retrieved
17
Coverage is 46.4% in 4939 parts with average length 305
RNAcode: sum length genes 117582 81 regions
4% of CDS surface is retrieved
Annotation NCBI length: 1929312 (nuc)
8
Genome coverage is 49.6% in 1981 parts with average length 564
RNAcode: sum length genes 188388 (nuc) in 124 regions
10% of CDS surface is retrieved
11
Genome coverage is 62.4% in 2856 parts with average length 493
RNAcode: sum length genes 317985 (nuc) in 207 regions
16% of CDS surface is retrieved
14
Genome coverage is 66.9% in 3636 parts with average length 415
RNAcode: sum length genes 332766 (nuc) in 212 regions
17% of CDS surface is retrieved
17
Genome coverage is 67.5% in 4307 parts with average length 354
RNAcode: sum length genes 301734 (nuc) in 193 regions
16% of CDS surface is retrieved
Annotation NCBI length: 5487493 (nuc)
8
Genome coverage is 25.9% in 3026 parts with average length 534
RNAcode: sum length genes 447402 (nuc) in 319 regions
8% of CDS surface is retrieved
11
Genome coverage is 30.6% in 4705 parts with average length 405
RNAcode: sum length genes 452913 (nuc) in 313 regions
8% of CDS surface is retrieved
14
Genome coverage is 32.5% in 5601 parts with average length 361
RNAcode: sum length genes 436260 (nuc) in 304 regions
8% of CDS surface is retrieved
17
Genome coverage is 37.0% in 7059 parts with average length 327
RNAcode: sum length genes 427257 (nuc) in 303 regions
8% of CDS surface is retrieved
Annotation NCBI length: 5714619 (nuc)
8
Coverage is 38.9% in 2194 parts with average length 576
7% of CDS surface is retrieved
11
Coverage is 43.6% in 2733 parts with average length 518
7% of CDS surface is retrieved
14
Coverage is 47.1% in 3408 parts with average length 449
7% of CDS surface is retrieved
17
Coverage is 48.1% in 3878 parts with average length 403
7% of CDS surface is retrieved
Annotation NCBI length: 5714619 (nuc)
8
Genome coverage is 41.4% in 4875 parts with average length 535
RNAcode: sum length genes 575868 (nuc) in 351 regions
10% of CDS surface is retrieved
11
Genome coverage is 44.7% in 6473 parts with average length 434
RNAcode: sum length genes 603576 (nuc) in 370 regions
11% of CDS surface is retrieved
14
Genome coverage is 48.1% in 7288 parts with average length 416
RNAcode: sum length genes 582003 (nuc) in 341 regions
10% of CDS surface is retrieved
17
Genome coverage is 50.3% in 9141 parts with average length 346
RNAcode: sum length genes 549963 (nuc) in 329 regions
10% of CDS surface is retrieved
Annotation NCBI length: 3237807 (nuc)
8
Coverage is 36.0% in 2334 parts with average length 553
RNAcode: sum length genes 427380 299 regions
13% of CDS surface is retrieved
11
Coverage is 41.3% in 3257 parts with average length 455
RNAcode: sum length genes 415818 288 regions
13% of CDS surface is retrieved
14
Coverage is 43.5% in 3904 parts with average length 399
RNAcode: sum length genes 406008 285 regions
13% of CDS surface is retrieved
17
Coverage is 45.7% in 4570 parts with average length 359
RNAcode: sum length genes 388602 267 regions
12% of CDS surface is retrieved