SnoReport: computational identification of snoRNAs with unknown targets.
Detecting novel or orphan snoRNAs in RNA sequence data using sequence and structure information only without relying on target information.
If you use SnoReport please cite the corresponding publication:
SnoReport: computational identification of snoRNAs with unknown targets.
Bioinformatics. 2008 Jan 15;24(2):158-64. Epub 2007 Sep 25. Hertel J, Hofacker IL, Stadler PF.
Download: SnoReport-1.2.3.tar.gz | README
Please feel free to contact me about bugs, problems and older versions.
Supplemental material
The following files contain the sequences that were used for training and testing the single sequence SVM models (in FASTA format:)
Position specific weight matrices of the characteristic box motifs:
H box → Download
1.000000, 0.250000, 1.000000, 0.250000, 0.250000, 1.000000
0.000000, 0.250000, 0.000000, 0.250000, 0.250000, 0.000000
0.000000, 0.250000, 0.000000, 0.250000, 0.250000, 0.000000
0.000000, 0.250000, 0.000000, 0.250000, 0.250000, 0.000000
0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000 |
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C box → Download
0.743191, 0.000000, 0.011673, 0.992218, 0.035019, 0.003891, 0.840467
0.035019, 0.003891, 0.007782, 0.000000, 0.000000, 0.000000, 0.007782
0.217899, 0.042802, 0.976654, 0.003891, 0.007782, 0.988327, 0.054475
0.003891, 0.953307, 0.003891, 0.003891, 0.957198, 0.007782, 0.097276
0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000 |
 |
D box → Download
0.007782, 0.000000, 0.000000, 1.000000
0.988327, 0.000000, 0.011673, 0.000000
0.003891, 0.000000, 0.988327, 0.000000
0.000000, 1.000000, 0.000000, 0.000000
0.000000, 0.000000, 0.000000, 0.000000
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