RNAsnoop: efficient target prediction for H/ACA snoRNAs.
Bioinformatics. 2010 Mar 1;26(5):610-6. Epub 2009 Dec 16.Tafer H, Kehr S, Hertel J, Hofacker IL, Stadler PF.
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Homology-based annotation of non-coding RNAs in the genomes of Schistosoma mansoni and Schistosoma japonicum.
BMC Genomics. 2009 Oct 8;10:464.Copeland CS, Mrz M, Rose D, Hertel J, Brindley PJ, Santana CB, Kehr S, Attolini CS, Stadler PF.
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Accurate and efficient reconstruction of deep phylogenies from structured RNAs.
Nucleic Acids Res. 2009 Oct;37(18):6184-93. Epub 2009 Sep 1.
Stocsits RR, Letsch H, Hertel J, Misof B, Stadler PF.
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Evidence for human microRNA-offset RNAs in small RNA sequencing data.
Bioinformatics. 2009 Sep 15;25(18):2298-301. Epub 2009 Jul 6.Langenberger D, Bermudez-Santana C, Hertel J, Hoffmann S, Khaitovich P, Stadler PF.
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