Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,894,346 – 2,894,479 |
Length | 133 |
Max. P | 0.938708 |
Location | 2,894,346 – 2,894,458 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 75.51 |
Mean single sequence MFE | -24.53 |
Consensus MFE | -17.40 |
Energy contribution | -18.10 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.20 |
Mean z-score | -1.57 |
Structure conservation index | 0.71 |
SVM decision value | 1.27 |
SVM RNA-class probability | 0.938708 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2894346 112 - 22224390 AAAUGCUAACAAAUAACAAGCCGCUUUGAGUAACUACUCGAGUUGGCUAACUCGCCAAGUUGUCAG-UGGGCAAAUGGCAAGGAAAUGAAACGAAACGGAACGAAAAUAGUCA ....((((..........(((((.(((((((....))))))).)))))..((.((((..(((((..-..))))).)))).)).........................)))).. ( -26.90) >DroSec_CAF1 281133 112 - 1 AAAUGCUAACAAAUAACAAGCCGCUUUGAGUAACUACUCGAGUUGGCUAACUCGCCAAGUUGUCAG-UGGGCAAAAGGCAAGGAAAUGAAACGAAACGGAACGAAAAUAGUCA ....((((..........(((((.(((((((....))))))).)))))..((.(((...(((((..-..)))))..))).)).........................)))).. ( -26.00) >DroSim_CAF1 251465 112 - 1 AAAUGCUAACAAAUAACAAGCCGCUUUGAGUAACUACUCGAGUUGGCUAACUCGCCAAGUUGUCAG-UGGGCAAAAGGCAAGGAAAUGAAACGAAACGGAACGAAAAUAGUCA ....((((..........(((((.(((((((....))))))).)))))..((.(((...(((((..-..)))))..))).)).........................)))).. ( -26.00) >DroEre_CAF1 304756 96 - 1 AAAUGCUAACAAAUAACGAGCCGCUUUGAGUAACUACUUGAGUUGGCUAACUCGCCAAGUUGUCAGUGGGGCAAAAGGCGCGGAGAGG---------------AAAAUAGU-- ....((((..........(((((.((..(((....)))..)).)))))..(.((((...(((((.....)))))..)))).)......---------------....))))-- ( -25.20) >DroYak_CAF1 289420 93 - 1 AAAUGCUAACAAAUAACGAGCCGCUUUGAGUAACUACUUGAGUUGGCUAACUCACCAAGUUGUCAG-GGGGCAAAAGGC--AAAGAGG---------------AAACAAGU-- ...((((..(.......).(((.((((((.(((((...((((((....))))))...)))))))))-)))))....)))--)....(.---------------...)....-- ( -23.50) >DroAna_CAF1 446911 99 - 1 AAGUGGCAAUAAUUU--AGGUAGCAGAAAGUAACUACUUAAGUUAACUAACUCGCCAAGUUGUCAG-UG----ACAGGCCCAGA-----CCCAGUGCUAGACCAAAAUUGU-- ...(((((.((((((--((((((..........))))))))))))........(((....((((..-.)----)))))).....-----.....)))))............-- ( -19.60) >consensus AAAUGCUAACAAAUAACAAGCCGCUUUGAGUAACUACUCGAGUUGGCUAACUCGCCAAGUUGUCAG_UGGGCAAAAGGCAAGGAAAUG_AACGAAACGGAACGAAAAUAGU__ ..................(((((.(((((((....))))))).))))).....(((...(((((.....)))))..))).................................. (-17.40 = -18.10 + 0.70)
Location | 2,894,386 – 2,894,479 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 83.07 |
Mean single sequence MFE | -22.40 |
Consensus MFE | -15.62 |
Energy contribution | -18.07 |
Covariance contribution | 2.45 |
Combinations/Pair | 1.18 |
Mean z-score | -1.52 |
Structure conservation index | 0.70 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2894386 93 + 22224390 UGCCCA-CUGACAACUUGGCGAGUUAGCCAACUCGAGUAGUUACUCAAAGCGGCUUGUUAUUUGUUAGCAUUUUCGCUUUUUCGUUGUCGACUU ......-.((((((((((((......)))))...((((....))))(((((((..(((((.....)))))...)))))))...))))))).... ( -28.40) >DroSec_CAF1 281173 93 + 1 UGCCCA-CUGACAACUUGGCGAGUUAGCCAACUCGAGUAGUUACUCAAAGCGGCUUGUUAUUUGUUAGCAUUUUCGCUUUUUCGUCGUCGACUU ......-.((((.(((((((......)))))...((((....))))(((((((..(((((.....)))))...)))))))...)).)))).... ( -24.30) >DroSim_CAF1 251505 93 + 1 UGCCCA-CUGACAACUUGGCGAGUUAGCCAACUCGAGUAGUUACUCAAAGCGGCUUGUUAUUUGUUAGCAUUUUCGCUUUUUCGUCGUCGACUU ......-.((((.(((((((......)))))...((((....))))(((((((..(((((.....)))))...)))))))...)).)))).... ( -24.30) >DroEre_CAF1 304779 94 + 1 UGCCCCACUGACAACUUGGCGAGUUAGCCAACUCAAGUAGUUACUCAAAGCGGCUCGUUAUUUGUUAGCAUUUUCGCUUUUUCGCUGUCGACUU ........(((((.((((((......)))))...............(((((((...((((.....))))....)))))))...).))))).... ( -18.50) >DroYak_CAF1 289441 93 + 1 UGCCCC-CUGACAACUUGGUGAGUUAGCCAACUCAAGUAGUUACUCAAAGCGGCUCGUUAUUUGUUAGCAUUUUCGCUUUUUCGUUGUUGACUU .((((.-.(((.((((...((((((....))))))...))))..)))..).))).........(((((((....((......)).))))))).. ( -20.20) >DroAna_CAF1 446944 73 + 1 ----CA-CUGACAACUUGGCGAGUUAGUUAACUUAAGUAGUUACUUUCUGCUACCU--AAAUUAUUGCCACUU---------C--UGUCGG--- ----..-((((((...(((((((((....)))))..(((((........)))))..--........))))...---------.--))))))--- ( -18.70) >consensus UGCCCA_CUGACAACUUGGCGAGUUAGCCAACUCAAGUAGUUACUCAAAGCGGCUUGUUAUUUGUUAGCAUUUUCGCUUUUUCGUUGUCGACUU ........((((((((((((......)))))...((((....))))(((((((..(((((.....)))))...)))))))...))))))).... (-15.62 = -18.07 + 2.45)
Location | 2,894,386 – 2,894,479 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 83.07 |
Mean single sequence MFE | -24.78 |
Consensus MFE | -18.39 |
Energy contribution | -18.92 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.29 |
Mean z-score | -2.48 |
Structure conservation index | 0.74 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.828711 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2894386 93 - 22224390 AAGUCGACAACGAAAAAGCGAAAAUGCUAACAAAUAACAAGCCGCUUUGAGUAACUACUCGAGUUGGCUAACUCGCCAAGUUGUCAG-UGGGCA ..(((((((((......((((...((....)).......(((((.(((((((....))))))).)))))...))))...))))))..-..))). ( -25.40) >DroSec_CAF1 281173 93 - 1 AAGUCGACGACGAAAAAGCGAAAAUGCUAACAAAUAACAAGCCGCUUUGAGUAACUACUCGAGUUGGCUAACUCGCCAAGUUGUCAG-UGGGCA ..(((.(((((((....((((...((....)).......(((((.(((((((....))))))).)))))...))))....))))).)-).))). ( -29.20) >DroSim_CAF1 251505 93 - 1 AAGUCGACGACGAAAAAGCGAAAAUGCUAACAAAUAACAAGCCGCUUUGAGUAACUACUCGAGUUGGCUAACUCGCCAAGUUGUCAG-UGGGCA ..(((.(((((((....((((...((....)).......(((((.(((((((....))))))).)))))...))))....))))).)-).))). ( -29.20) >DroEre_CAF1 304779 94 - 1 AAGUCGACAGCGAAAAAGCGAAAAUGCUAACAAAUAACGAGCCGCUUUGAGUAACUACUUGAGUUGGCUAACUCGCCAAGUUGUCAGUGGGGCA .....((((((......((((...((....)).......(((((.((..(((....)))..)).)))))...))))...))))))......... ( -23.00) >DroYak_CAF1 289441 93 - 1 AAGUCAACAACGAAAAAGCGAAAAUGCUAACAAAUAACGAGCCGCUUUGAGUAACUACUUGAGUUGGCUAACUCACCAAGUUGUCAG-GGGGCA ................(((......)))............(((.((((((.(((((...((((((....))))))...)))))))))-))))). ( -22.20) >DroAna_CAF1 446944 73 - 1 ---CCGACA--G---------AAGUGGCAAUAAUUU--AGGUAGCAGAAAGUAACUACUUAAGUUAACUAACUCGCCAAGUUGUCAG-UG---- ---..((((--(---------...((((..((((((--((((((..........))))))))))))........))))..)))))..-..---- ( -19.70) >consensus AAGUCGACAACGAAAAAGCGAAAAUGCUAACAAAUAACAAGCCGCUUUGAGUAACUACUCGAGUUGGCUAACUCGCCAAGUUGUCAG_UGGGCA .....((((((.....(((......)))...........(((((.(((((((....))))))).)))))..........))))))......... (-18.39 = -18.92 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:58 2006