Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,872,595 – 2,872,697 |
Length | 102 |
Max. P | 0.851855 |
Location | 2,872,595 – 2,872,697 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.99 |
Mean single sequence MFE | -31.29 |
Consensus MFE | -18.94 |
Energy contribution | -18.67 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.19 |
Mean z-score | -1.98 |
Structure conservation index | 0.61 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.851855 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2872595 102 - 22224390 --AAAAAAUGAAAU---GAAGGAGCGUGCGUGAGCAUCGUCAGCCGGGCUUCAUUUUCCAUCUUCCUGACAGGUGCUGCUGCAUGGAUUUUCC-CCUGCUCCU------------CGUUU --........((((---((.((((((((((..(((((((((((..(((............)))..))))).))))))..)))))((.....))-...))))))------------))))) ( -33.50) >DroPse_CAF1 359510 101 - 1 ---AAAAGCAGAUUGGAGCAGAAGCGUGCGUGAGCAUCGUCAGCUCUGGUUCAUCUUCCAUCCUCUUGACAGGUUC---UGCAUGAAUUUGCUCCCAACUCCU------------C-UUU ---...((((((((.(.((((((.(((((....)))).(((((...(((........))).....))))).).)))---))).).))))))))..........------------.-... ( -32.20) >DroEre_CAF1 282714 99 - 1 --AAAAAAUGAAAU---GAAGGAGCGUGCGUGAGCAUCGUCAGCCGGGCUUCAUUUUCCAUCUUCCUGACAGGUGC---UGCAUGGAUUUUCC-CCUGCUCCU------------CGUUU --........((((---((.(((((((((...(((((((((((..(((............)))..))))).)))))---)))))((.....))-...))))))------------))))) ( -30.80) >DroYak_CAF1 267456 99 - 1 --AAAAAAUGAAAU---GAAGGAGCGUGCGUGAGCAUCGUCAGCCGGGCUUCAUUUUCCAUCUUCCUGGCAGGUGC---UGCAUGGAUUUUCC-CCUGCUCCU------------CGUUU --........((((---((.(((((((((...((((((....((((((................)))))).)))))---)))))((.....))-...))))))------------))))) ( -33.09) >DroAna_CAF1 411098 113 - 1 AGAAAAAAUCAAGA---GAAAAAGCGUGCGUGAGCAUCGUCAGUCCGGCUUCAUUUUCCAUCUUCCUGACAGGUGC---UGCAUGAAUCUGCU-CCUUCUCCUUCUCCUUUUUAUUGUUU ............((---(((..((((..(((((((((((((((......................))))).)))))---).))))....))))-..)))))................... ( -25.95) >DroPer_CAF1 379541 101 - 1 ---AAAAGCAGAUUGGAGCAGAAGCGUGCGUGAGCAUCGUCAGCUCUGGUUCAUCUUCCAUCCUCUUGACAGGUUC---UGCAUGAAUUUGCUCCCAACUCCU------------C-UUU ---...((((((((.(.((((((.(((((....)))).(((((...(((........))).....))))).).)))---))).).))))))))..........------------.-... ( -32.20) >consensus __AAAAAAUGAAAU___GAAGAAGCGUGCGUGAGCAUCGUCAGCCCGGCUUCAUUUUCCAUCUUCCUGACAGGUGC___UGCAUGAAUUUGCC_CCUGCUCCU____________CGUUU .................(((((..((((((...((((((((((......................))))).)))))...))))))..)))))............................ (-18.94 = -18.67 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:48 2006