Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,858,848 – 2,858,958 |
Length | 110 |
Max. P | 0.727463 |
Location | 2,858,848 – 2,858,958 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 88.50 |
Mean single sequence MFE | -28.38 |
Consensus MFE | -20.06 |
Energy contribution | -19.90 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.22 |
Mean z-score | -2.12 |
Structure conservation index | 0.71 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.727463 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2858848 110 + 22224390 AA-AAAUAAUGCCUUUGGCCCAAAAUUUUACGAAGCUCGAUUUAUGGCCCGAUUUCGCAAGAUCGAAACGGAGAAAGGUCG-AAAAAGUUGGCGAAAGGAAUUGGUUUUGUU .(-((((....(((((.(((.((..((((.(((.(((........)))(((.(((((......)))))))).......)))-))))..))))).))))).....)))))... ( -25.90) >DroSec_CAF1 246293 108 + 1 AA-AAAUAAUGCCUUUGGCCGAAA--UUUACGAGGCGAGAUUUAUGGCCCGAUUUUGCAAGAUCGUAACGGAGAAAGGUCG-AAAAAGUUGGCGAAAGGAAUCAUUUUUGUU ((-((((.((.(((((.(((((..--.((((((.((((((((........))))))))....))))))(((.......)))-......))))).))))).)).))))))... ( -29.10) >DroSim_CAF1 216226 109 + 1 AA-AAAUAAUGCCUUUGGCCGAAA--UUUACGAGGCGAGAUUUAUGGCCCGAUUUUGCAAGAUCGAAACGGAGAAAGGUCGGAAAAAUUUGGCGAAAGGAAUCAGUUUUGUU .(-((((....(((((.((((((.--(((.((((((.(......).)))((((((....)))))).............)))..))).)))))).))))).....)))))... ( -27.90) >DroEre_CAF1 267425 108 + 1 AA-AAAUAAUGCCUUUGGCCGAAA--UUCACGAAGCGAGAUUUAUGGCUCGAUUUGGCAAGAUCUGAGCGGAGAAAGGCCG-GAAAAGUUGGCGAAAGGAAUGAGUUUGGUU ..-........(((((.(((((..--(((.(((.((.(......).)))))...((((....(((....))).....))))-)))...))))).)))))............. ( -28.80) >DroYak_CAF1 254059 109 + 1 AAAAAAUAAAGCCUUUGGCCGAAA--UUCACGAAUCGAGAUUUAUGGCUCGAUUUGGCAAGAUCAGAACGGAGAAAGGUCG-GAAAAGUUGGCGAAAGGAAUAAGCUUGAUU ...........(((((.(((((..--(((.(((((((((........)))))))))....((((............)))).-)))...))))).)))))............. ( -30.20) >consensus AA_AAAUAAUGCCUUUGGCCGAAA__UUUACGAAGCGAGAUUUAUGGCCCGAUUUGGCAAGAUCGAAACGGAGAAAGGUCG_AAAAAGUUGGCGAAAGGAAUCAGUUUUGUU ...........(((((.(((((....(((.(((.((.(......).))(((.(((((......)))))))).......))).)))...))))).)))))............. (-20.06 = -19.90 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:45 2006