Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,810,302 – 2,810,398 |
Length | 96 |
Max. P | 0.771129 |
Location | 2,810,302 – 2,810,398 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 93.75 |
Mean single sequence MFE | -33.87 |
Consensus MFE | -33.39 |
Energy contribution | -32.07 |
Covariance contribution | -1.32 |
Combinations/Pair | 1.21 |
Mean z-score | -1.58 |
Structure conservation index | 0.99 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.771129 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2810302 96 + 22224390 GGUGGCUCUGUUGCUGCUGCUGCUGUAGUUGCAAUUGGUUCUGAUGGUUGUUCUGCAUAAUGGUCGAGCUGCCAUUGGAUUUCGUCGAACAGGUGG ..((((((.(((((.(((((....))))).))))).)).((..(((((.((((.((......)).)))).)))))..))....))))......... ( -31.60) >DroSec_CAF1 198768 96 + 1 GGUGGCUCUGUUGCUGCUGCUGCUGUAGUUGCAACUGGUUCUGGUGGUUGUUCUGCAGAAUGGUCGAACUGCCGUUGGACUUCGUCGAGCAGGUGG ....((((.(((((.(((((....))))).))))).((.(((..((((.((((.((......)).)))).))))..)))..))...))))...... ( -34.80) >DroYak_CAF1 205207 96 + 1 GGUGGCUCUGUUGCUGCUGCUGCUGCAGUUGCAAUUGAUUCUGGUGGUUGUUCUGCAGAAUGGUCGAGCUGCCAUUGGACUUCGUCGAACAGGUGG ....((.(((((((.(((((....))))).))).(((((((..(((((.((((.((......)).)))).)))))..))....))))))))))).. ( -35.20) >consensus GGUGGCUCUGUUGCUGCUGCUGCUGUAGUUGCAAUUGGUUCUGGUGGUUGUUCUGCAGAAUGGUCGAGCUGCCAUUGGACUUCGUCGAACAGGUGG ..((((((.(((((.(((((....))))).))))).)).((..(((((.((((.((......)).)))).)))))..))....))))......... (-33.39 = -32.07 + -1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:25 2006