Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,679,850 – 2,679,948 |
Length | 98 |
Max. P | 0.959382 |
Location | 2,679,850 – 2,679,948 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 77.44 |
Mean single sequence MFE | -29.65 |
Consensus MFE | -16.06 |
Energy contribution | -18.88 |
Covariance contribution | 2.81 |
Combinations/Pair | 1.21 |
Mean z-score | -2.55 |
Structure conservation index | 0.54 |
SVM decision value | 1.50 |
SVM RNA-class probability | 0.959382 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2679850 98 + 22224390 UCCUUGUUGCCAGGACU--ACGGGCAAAGAAUCGUGGCUGGUACGAUAAGCCCUACCAGAAGGGAACUUUGAUGCCGUUUUAAAGUGCAUCAAGAAUUAA ..(((((((((((..((--((((........)))))))))))..))))))((((......))))...(((((((((........).))))))))...... ( -29.50) >DroSec_CAF1 85134 98 + 1 UCCUUGUUGCUAGGACU--ACGGGAAAAGAAUCGUGGUUGGUACGGUAAGCCCUGGCAGAAGGGAACUUUGAUGUCAUUUUAAAGUGCAUCAAGAAUUAA (((((.(((((((((((--((((........))))))))(((.......)))))))))).)))))..(((((((.((((....)))))))))))...... ( -33.10) >DroEre_CAF1 98926 80 + 1 UCCUUGUUGCCAGGAUGCUACG-CAAAAGGACCACGGAUCGU-------------------GGGAACUUUGAUGCCGCUUUAAAGUGCAUCAAGAAUUAA (((((.((((.((....))..)-))))))))(((((...)))-------------------))....((((((((.(((....)))))))))))...... ( -23.10) >DroYak_CAF1 92839 98 + 1 UCCAUGUUGCCAGGACG--ACGGGAUAAGAACCGUGGAGCGUACGGUAAUCCGUGGCAAAAGGGAACUUUGAUGCCGUUUUAAAGUGCAUCAAGAAUUAA (((...(((((....(.--((((........)))).).....((((....)))))))))...)))..(((((((((........).))))))))...... ( -32.90) >consensus UCCUUGUUGCCAGGACG__ACGGGAAAAGAACCGUGGAUCGUACGGUAAGCCCUGGCAGAAGGGAACUUUGAUGCCGUUUUAAAGUGCAUCAAGAAUUAA (((((.(((((((((((..((((........))))....))).........)))))))).)))))..(((((((((........).))))))))...... (-16.06 = -18.88 + 2.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:58 2006