Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,610,239 – 2,610,352 |
Length | 113 |
Max. P | 0.954412 |
Location | 2,610,239 – 2,610,352 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 96.90 |
Mean single sequence MFE | -22.60 |
Consensus MFE | -21.19 |
Energy contribution | -21.25 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.03 |
Mean z-score | -2.45 |
Structure conservation index | 0.94 |
SVM decision value | 1.44 |
SVM RNA-class probability | 0.954412 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2610239 113 + 22224390 AUUUGCUAAUGCUGAUUGAUUAUAUAAACGAUACAGAACACAAGUUCAUUUUAAAUUAAUCCAUGUUUGUGUAAUGCACACAAUGUGUGUCACACAUUUUAUAUAAUUCAUUA ....((....))((((.(((((((((((.......((((....))))....................(((((.((((((.....)))))).))))).))))))))))).)))) ( -23.70) >DroSec_CAF1 18187 113 + 1 AUUUGCUAAUGCUGAUUGAUUAUAUAAACGAUACAGAACACAAGUUCAAUUUAAAUUAAUCCAUGUUUGUGUAAUGCACACAAUGUGUGUCACACAUUUUAUAUAAUUUAUUA ....((....))((((.(((((((((((.......((((....))))....................(((((.((((((.....)))))).))))).))))))))))).)))) ( -23.70) >DroSim_CAF1 17877 113 + 1 AUUUGCUAAUGCUGAUUGAUUAUAUAAACGAUACAGAACACAAGUUCAAUUUAAAUUAAUCCAUGUUUGUGUAAUGCACACAAUGUGUGUCACACAUUUUAUAUAAUUUAUUA ....((....))((((.(((((((((((.......((((....))))....................(((((.((((((.....)))))).))))).))))))))))).)))) ( -23.70) >DroYak_CAF1 19646 113 + 1 AUUUCCUAAUGCUGAUUGAUUAUAUAAACGAUACAGAAAACAAGUUCAAUUUGAAUUAAUCCACGUUUGUGUAAUGCAUACAAUGUGUGUCACACAUUUUAUAUAAUUUAUUA ............((((.(((((((((((..............(((((.....)))))..........(((((.((((((.....)))))).))))).))))))))))).)))) ( -19.30) >consensus AUUUGCUAAUGCUGAUUGAUUAUAUAAACGAUACAGAACACAAGUUCAAUUUAAAUUAAUCCAUGUUUGUGUAAUGCACACAAUGUGUGUCACACAUUUUAUAUAAUUUAUUA ............((((.(((((((((((.......((((....))))....................(((((.((((((.....)))))).))))).))))))))))).)))) (-21.19 = -21.25 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:40 2006