Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,556,885 – 2,556,986 |
Length | 101 |
Max. P | 0.990175 |
Location | 2,556,885 – 2,556,986 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 74.92 |
Mean single sequence MFE | -19.90 |
Consensus MFE | -16.59 |
Energy contribution | -16.70 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.06 |
Mean z-score | -1.65 |
Structure conservation index | 0.83 |
SVM decision value | 2.20 |
SVM RNA-class probability | 0.990175 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2556885 101 + 22224390 GUACCACACU--UAAUUUAAAUCAAUACUCUCUUCUGUAGCCAUCGCAACCGCAUCACUUCGCAGCCAAUAAAGCUUAUAUUAAGUCUUCUGGCGGAUGGCUA ..........--.........................((((((((((....))...........((((...(((((((...)))).))).)))).)))))))) ( -21.10) >DroSim_CAF1 1072 85 + 1 GUA------------------UCAAUACUCUCUUCUGCAGCCAUCGCAACCGCAUCCAUUCACAGCCAAUGAUGCUUAUAUUAAGUCUUCUGGCUGAUGGCUA ...------------------.................(((((((((....))..........(((((..((.(((((...)))))..)))))))))))))). ( -21.60) >DroYak_CAF1 367 99 + 1 GUACCACACCUGUAACUUUAAUCAAUACUCUCAUUCGGAGCCAUCGC----GCAUCCGUUCGCAACCACUAAAGCUUAUAUUAAGUCUUCUGGCGGAUGGCAU .......................................((((((.(----((....(....).....(..(((((((...)))).)))..)))))))))).. ( -17.00) >consensus GUACCACAC___UAA_UU_AAUCAAUACUCUCUUCUGCAGCCAUCGCAACCGCAUCCAUUCGCAGCCAAUAAAGCUUAUAUUAAGUCUUCUGGCGGAUGGCUA .......................................((((((((....))...........((((..((..((((...))))..)).)))).)))))).. (-16.59 = -16.70 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:57:08 2006