Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,507,250 – 2,507,381 |
Length | 131 |
Max. P | 0.998746 |
Location | 2,507,250 – 2,507,363 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.03 |
Mean single sequence MFE | -30.24 |
Consensus MFE | -25.52 |
Energy contribution | -24.96 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.09 |
Mean z-score | -2.64 |
Structure conservation index | 0.84 |
SVM decision value | 3.06 |
SVM RNA-class probability | 0.998296 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2507250 113 - 22224390 ------CUGCCCACACAAUUUGCAUUAAAAAUAGACAAAAGGCAAGUGAUAAUAUUUGGCGUCUAUUUUUGGAUGCAAAACGUUCCUACUGUUGAUCAAUUAAUUGACGCCAG-GCAAUG ------.((((.......((((((((((((((((((....(.((((((....)))))).))))))))))).))))))))...........((..((......))..))....)-)))... ( -29.30) >DroSec_CAF1 5837 113 - 1 ------CUGCCCACAAAAUUUGCAUUAAAAAUAGACAAAAGGCAAGUGAUAAUAUUUGGCGUCUAUUUUUGGAUGCAAAACGUUCCUACUGUUGAUCAAUUAAUUGACGCCUG-GCAAUG ------.((((.......((((((((((((((((((....(.((((((....)))))).))))))))))).))))))))...........((..((......))..))....)-)))... ( -29.10) >DroSim_CAF1 6743 113 - 1 ------CUGCCCACGAAAUUUGCAUUAAAAAUAGACAAAAGGCAAGUGAUAAUAUUUGGCGUCUAUUUUUGGAUGCAAAACGUUCCUACUGUUGAUCAAUUAAUUGACGCCUG-GCAAUG ------.((((...(((.((((((((((((((((((....(.((((((....)))))).))))))))))).))))))))...))).....((..((......))..))....)-)))... ( -29.90) >DroEre_CAF1 6228 119 - 1 UUUUAUCUGCCCACAAAAUUUGCAUUAAAAAUAGACAAAAGGCAAGUGAUAAUAUUUGGUGUCUAUUUUUGGAUGCGAAACGUUACCUCUGUUGAUCAAUUAAUUGACGCCUG-GCAAUG .......((((.......(((((((((((((((((((.....((((((....)))))).))))))))))).))))))))...........((..((......))..))....)-)))... ( -28.80) >DroYak_CAF1 7277 120 - 1 UUUUAUCUGCCCACAAAAUUUGCAUUAAAAAUAGACAAAAGGCAAGUGAUAAUAUUUGGUGUCUAUUUUUGGAUGCAAAACGUUCCCUCUGUUGAUCAAUUAAUUGACGCCUGGGCGAUG ...((((.(((((.....(((((((((((((((((((.....((((((....)))))).))))))))))).))))))))...........((..((......))..))...))))))))) ( -34.10) >consensus ______CUGCCCACAAAAUUUGCAUUAAAAAUAGACAAAAGGCAAGUGAUAAUAUUUGGCGUCUAUUUUUGGAUGCAAAACGUUCCUACUGUUGAUCAAUUAAUUGACGCCUG_GCAAUG .......(((........((((((((((((((((((....(.((((((....)))))).))))))))))).))))))))...........((..((......))..))......)))... (-25.52 = -24.96 + -0.56)
Location | 2,507,289 – 2,507,381 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.65 |
Mean single sequence MFE | -20.94 |
Consensus MFE | -20.70 |
Energy contribution | -20.30 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.08 |
Mean z-score | -2.84 |
Structure conservation index | 0.99 |
SVM decision value | 3.21 |
SVM RNA-class probability | 0.998746 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2507289 92 - 22224390 UCCUUUUCUCCCCAUUAC----------------------------CUGCCCACACAAUUUGCAUUAAAAAUAGACAAAAGGCAAGUGAUAAUAUUUGGCGUCUAUUUUUGGAUGCAAAA ..................----------------------------............((((((((((((((((((....(.((((((....)))))).))))))))))).)))))))). ( -21.00) >DroSec_CAF1 5876 92 - 1 UCCUUUUCUCCCCAUUCC----------------------------CUGCCCACAAAAUUUGCAUUAAAAAUAGACAAAAGGCAAGUGAUAAUAUUUGGCGUCUAUUUUUGGAUGCAAAA ..................----------------------------............((((((((((((((((((....(.((((((....)))))).))))))))))).)))))))). ( -21.00) >DroSim_CAF1 6782 92 - 1 UCCUUUUCUCCCCAUUCC----------------------------CUGCCCACGAAAUUUGCAUUAAAAAUAGACAAAAGGCAAGUGAUAAUAUUUGGCGUCUAUUUUUGGAUGCAAAA ..................----------------------------............((((((((((((((((((....(.((((((....)))))).))))))))))).)))))))). ( -21.00) >DroEre_CAF1 6267 113 - 1 UCCUUUUCUCCCCAUUCCCAAC-------CUACCUCCUCAUUUUAUCUGCCCACAAAAUUUGCAUUAAAAAUAGACAAAAGGCAAGUGAUAAUAUUUGGUGUCUAUUUUUGGAUGCGAAA ......................-------.............................(((((((((((((((((((.....((((((....)))))).))))))))))).)))))))). ( -20.70) >DroYak_CAF1 7317 120 - 1 UCCUUUUUUCCCCAUCCCUCAAAUCCCCAUUCCCUCCCCAUUUUAUCUGCCCACAAAAUUUGCAUUAAAAAUAGACAAAAGGCAAGUGAUAAUAUUUGGUGUCUAUUUUUGGAUGCAAAA ..........................................................(((((((((((((((((((.....((((((....)))))).))))))))))).)))))))). ( -21.00) >consensus UCCUUUUCUCCCCAUUCC____________________________CUGCCCACAAAAUUUGCAUUAAAAAUAGACAAAAGGCAAGUGAUAAUAUUUGGCGUCUAUUUUUGGAUGCAAAA ..........................................................((((((((((((((((((....(.((((((....)))))).))))))))))).)))))))). (-20.70 = -20.30 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:23 2006