Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 22,050,986 – 22,051,080 |
Length | 94 |
Max. P | 0.939503 |
Location | 22,050,986 – 22,051,080 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 74.81 |
Mean single sequence MFE | -31.32 |
Consensus MFE | -19.40 |
Energy contribution | -22.35 |
Covariance contribution | 2.95 |
Combinations/Pair | 1.10 |
Mean z-score | -1.83 |
Structure conservation index | 0.62 |
SVM decision value | 1.30 |
SVM RNA-class probability | 0.939503 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 22050986 94 - 22224390 ----------UUUGCUGCAGUUAGCGGCACAUGCAGCAAAUCUUGUUUGCUGUAUGUGGCAUCUUCUGGAGCGGAUUCCCAUGAACCGUAGGCGCCCCUAGCUG----- ----------.......(((((((.((((((((((((((((...))))))))))))).((.((.....))((((.(((....)))))))..))))).)))))))----- ( -37.60) >DroSec_CAF1 109590 91 - 1 ----------UUUGCUGCAGUUAGCGGCACAUGCAGCAAAUCUUGUUUGCUGUAUGUGGCAUCAUCUGGAGCGGAUUCCCAUGAACUGUAGACGCCCUCAG-------- ----------....((((((((.(((.((((((((((((((...)))))))))))))).).((.....))))((....))...))))))))..........-------- ( -34.60) >DroSim_CAF1 88845 91 - 1 ----------UUGGCUGCAGUUAGCGGCACAUGCAGCAAAUCUUGUGUGCUGUAUGUGGCAUCAUCUGGAGCGGAUUCCCAUGAACUGUAGACGCCCUCUG-------- ----------..((((((((((.(((.(((((((((((.........))))))))))).).((.....))))((....))...)))))))...))).....-------- ( -31.90) >DroEre_CAF1 83942 80 - 1 -----------------------CUGGUGCA-GCAGCAAAUCUUGUUUGCUGUAUGUGGCAUCUUCUAGAGCGGAUUCCCAUGAACCGUAGGCGCCCUCAGCUG----- -----------------------..(((((.-(((((((((...)))))))))(((.((.((((.(....).)))).))))).........)))))........----- ( -24.10) >DroYak_CAF1 93232 104 - 1 GUGCUGCAUAUUGGCUGCAGUUAGCGGCACAUGCAGCAAAUCUUGUUUGCUGUAUGUGGCAUCUUCUGGAGCGUAUUCCCAUGAACCGAAGUCGCCCUCAGCUG----- ..((((.......(((((.....)))))(((((((((((((...)))))))))))))(((..((((.((..(((......)))..))))))..)))..))))..----- ( -40.70) >DroAna_CAF1 58108 80 - 1 -----------------------CUG----UUGCAGC--UUCGUGUUUACUGUGUGUGGCAUCUUCUGGAGCGGAUUCCCAUGAACUGAUGGCGCCCUCAACAGAACAA -----------------------(((----(((..((--(.((..(.....)..)).))).......((.(((.....((((......))))))))).))))))..... ( -19.00) >consensus __________UU_GCUGCAGUUAGCGGCACAUGCAGCAAAUCUUGUUUGCUGUAUGUGGCAUCUUCUGGAGCGGAUUCCCAUGAACCGUAGGCGCCCUCAGCUG_____ .............(((((.....)))))(((((((((((((...)))))))))))))(((.((.....))((((.(((....)))))))....)))............. (-19.40 = -22.35 + 2.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:20 2006