Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 22,024,981 – 22,025,078 |
Length | 97 |
Max. P | 0.779957 |
Location | 22,024,981 – 22,025,078 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 81.18 |
Mean single sequence MFE | -24.48 |
Consensus MFE | -14.12 |
Energy contribution | -14.08 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.18 |
Mean z-score | -2.12 |
Structure conservation index | 0.58 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.779957 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 22024981 97 - 22224390 CUGUGCUAG----AACUUGGACG---AAUUUAUGGCCAAGUGUGCGUUGUAAAAUGAAACUUCUGUUUAUUUAAAUAUGAAGCAGAAAGGCAUACACACAAUCA .((((....----...((((.((---......)).))))(((((((((.........)))((((((((((......))).)))))))..)))))).)))).... ( -19.90) >DroSec_CAF1 87403 97 - 1 CUGUGCUAU----AUCUUGGACG---AAUUUAUGGUGCAGUGUGCGUGGUAACAGAAAACUUUUGAUUAUUUAAAUAUUAAGCAGGAAGGCACACACACAAUCA (((..((((----(..((.....---))..)))))..)))((((.(((((((((((.....)))).))))...........((......)).))).)))).... ( -20.60) >DroSim_CAF1 66109 98 - 1 CUGUGCUAUAUAUAUCUUGGACG---AAUUUAUGGUGCAGUGUGCGUGGUAAAAGAAAACUUUUGUUUAUUUAAAUAUUAAGCAGGAAGGCACACACACAA--- .((..(((((.((.((......)---))).)))))..))(((((.(((((........))(((((((((.........)))))))))...))).)))))..--- ( -23.30) >DroEre_CAF1 61494 100 - 1 CCGUGCCAG----AACUGGGACGGAAAAAUUCUGGUCCAGUGUGCGUGGUAAAAGGAAACUUCUGUUUAUUUAAAUAUUAAGCAGAAAUGCACACACACAAUCA ((((.(((.----...))).))))...............((((((((.......(....)(((((((((.........)))))))))))))))))......... ( -32.70) >DroYak_CAF1 70215 94 - 1 UGGCACAAG----AAAUUGGACGAAAAAUUUGUGGCCCAGUGUGCGUGGUA---GGAAACUUCUGUUUAUUUAAAUAUUUAGCAGAAAUGCACACACACAA--- .(((.(((.----...))).((((.....)))).)))..((((((((....---(....)(((((((.............)))))))))))))))......--- ( -25.92) >consensus CUGUGCUAG____AACUUGGACG___AAUUUAUGGUCCAGUGUGCGUGGUAAAAGGAAACUUCUGUUUAUUUAAAUAUUAAGCAGAAAGGCACACACACAAUCA .......................................((((((...((........))(((((((((.........)))))))))..))))))......... (-14.12 = -14.08 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:18 2006