Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 21,978,966 – 21,979,064 |
Length | 98 |
Max. P | 0.985229 |
Location | 21,978,966 – 21,979,064 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 84.06 |
Mean single sequence MFE | -12.77 |
Consensus MFE | -12.71 |
Energy contribution | -12.27 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.10 |
Mean z-score | -1.36 |
Structure conservation index | 1.00 |
SVM decision value | 2.00 |
SVM RNA-class probability | 0.985229 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21978966 98 + 22224390 UCUUUCUUUGUUUUCUCAUUUGUUAUGCAAAAUUCUUGUUUCGCAAAUGAAAAUAAUACAAAAACAAACUAGUUUCUAUUUAAUAGGUCAUCUGUCCA ......(((((.((.((((((((...((((.....))))...)))))))).))....))))).......................((.(....).)). ( -14.20) >DroSec_CAF1 39839 80 + 1 UCUUUCUUUGUUUUCUUAUUUGUUAUGCAAAAUUGUUGUUUCACAAAUGAAAAUAAUACAAA------------------UAAUAGGUCAUCUGUCCA .......((((((((..((((((...((((.....))))...))))))))))))))......------------------.....((.(....).)). ( -12.20) >DroSim_CAF1 27067 80 + 1 UCUUUCUUUGUUUUCUUAUUUGUUAUGCAAAAUUGUUGUUUCACAAAUGAAAAUAGUACAAA------------------UAAUAGGUCAUCUGUCCA .......((((((((..((((((...((((.....))))...))))))))))))))......------------------.....((.(....).)). ( -11.90) >consensus UCUUUCUUUGUUUUCUUAUUUGUUAUGCAAAAUUGUUGUUUCACAAAUGAAAAUAAUACAAA__________________UAAUAGGUCAUCUGUCCA .......((((((((..((((((...((((.....))))...)))))))))))))).............................((.(....).)). (-12.71 = -12.27 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:10:08 2006