Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 21,835,446 – 21,835,536 |
Length | 90 |
Max. P | 0.588772 |
Location | 21,835,446 – 21,835,536 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 83.20 |
Mean single sequence MFE | -30.68 |
Consensus MFE | -18.70 |
Energy contribution | -19.82 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.09 |
Mean z-score | -1.93 |
Structure conservation index | 0.61 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.588772 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21835446 90 + 22224390 AAUUAGCAUGAGCGACUA-GCCAAGCGAGAGCGGCAA-AGUUGCCGCUAAUCAAGUUGGAGGUCAGUU-------UGUCGUCUGUCGGUUGGCAGAC-------UU .....((....))..((.-(((((.(((.((((((((-(.(.(((.(((((...))))).))).).))-------))))).)).))).)))))))..-------.. ( -34.90) >DroSec_CAF1 9908 97 + 1 AAUUAGCAUGAGCGACUA-GCCAAGCGAGAGUGGCAA-AGUUGCCGCUAAUCAAGUUGGAGGUCAGUUCGACAGUUGUCGUCUGUCAGUUGGCAGAC-------AU .........((((((((.-.((((..((.(((((((.-...)))))))..))...)))).)))).))))(((....)))(((((((....)))))))-------.. ( -35.90) >DroEre_CAF1 6240 97 + 1 AAUUAGCAUGAGAGACUA-GCCAAGCGAGAGCUGCAA-AGUUGCCGCUAAUCAAGUUGGAGGUCAGUUCGACAGUUGUCGUCUGUCCGUUGGCAGAC-------UU .((((((..(...((((.-((..(((....)))))..-)))).).))))))...((..(.((.(((..((((....)))).))).)).)..))....-------.. ( -28.30) >DroYak_CAF1 6453 97 + 1 AAUUAGCAUAAGCGACUA-GCCAAGAGAGAGCUGCAA-AGUUGCCGCUAAUCAAGUUGGAGGUCAGUUCGACAGUUGUCGUCUGUCAGUGGACAGAC-------UU .....((....))((((.-.((((((...(((.(((.-...))).)))..))...)))).)))).....(((....)))(((((((....)))))))-------.. ( -29.80) >DroAna_CAF1 5002 99 + 1 AAUUAGCAUCAGCGACUAAGCCAAGUGAGAGCUGCAAAAACUGCCGCUAAUCAAGUUGGAGGUCAGUUCGGCAGUUGGCA-------AAUGACAGACACAGAGACU .....((....))......(((((.((.((((((........(((.(((((...))))).)))))))))..)).))))).-------................... ( -24.50) >consensus AAUUAGCAUGAGCGACUA_GCCAAGCGAGAGCUGCAA_AGUUGCCGCUAAUCAAGUUGGAGGUCAGUUCGACAGUUGUCGUCUGUCAGUUGGCAGAC_______UU .............((((...((((..((.(((.(((.....))).)))..))...)))).))))...............(((((((....)))))))......... (-18.70 = -19.82 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:21 2006