Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 21,738,731 – 21,738,830 |
Length | 99 |
Max. P | 0.705143 |
Location | 21,738,731 – 21,738,830 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 74.65 |
Mean single sequence MFE | -17.09 |
Consensus MFE | -4.88 |
Energy contribution | -4.92 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.14 |
Mean z-score | -1.70 |
Structure conservation index | 0.29 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.590327 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21738731 99 + 22224390 U-UUCGCCUAAUAGUUGUCACGAUAAACUUUUGCAAAAUAUGUUGCGUCUACAGCAAUGAUUUAUACUUAAUUACCU-UGUUUUGAAAUGACGACAACC----AA .-...........((((((((((.......)))((((((((((((......))))).(((((.......)))))...-)))))))...)))))))....----.. ( -15.30) >DroSec_CAF1 30351 83 + 1 U-UUCGCCUAAUAGUUGUCAUGAUAAACUUUUGCAAAAUAUAUA--------------UAUUUAUACUUAAUUACCUUUGUUUUGCAAUGA---CAACC----AA .-...........((((((((..........(((((((((....--------------...(((....))).......)))))))))))))---)))).----.. ( -15.64) >DroSim_CAF1 30746 82 + 1 U-UUCGCCUAAUAGUUGUCAUGAUAAACUUUUGCAAAAUAUAUA--------------UAUUUAUACUUAAUUACCU-UGUUUUGCAAUGA---CAACC----AA .-...........((((((((..........(((((((((....--------------...(((....)))......-)))))))))))))---)))).----.. ( -15.22) >DroEre_CAF1 29586 97 + 1 UUUUCGCUUUAUAGUUGUUAUGAUAAACUUUUGCAGAAUAUGUUGCUUGU---GCAAUAAUCUAUACUUAAGUACAU-CGUCUUGCAAUGAUGACUACC----AA ........((((.(((((.(((((..((((..(.(((...((((((....---)))))).)))...)..))))..))-)))...))))).)))).....----.. ( -16.00) >DroYak_CAF1 30730 101 + 1 UUUUCGCCUAAUAGUGGUUAUGACACACUUUUGCAGAAUAUGUUGGUUGUACAGCAAUGAUCUAUGCUA---UGCUA-UGUUUUGCAAUGAUGACAACCAACCAA ..(((((.....((((((....)).))))...)).)))...(((((((((..((((........)))).---(((..-......)))......)))))))))... ( -23.30) >consensus U_UUCGCCUAAUAGUUGUCAUGAUAAACUUUUGCAAAAUAUGUUG__U_U___GCAAUGAUUUAUACUUAAUUACCU_UGUUUUGCAAUGA_GACAACC____AA ............((((.........)))).((((((((((......................................))))))))))................. ( -4.88 = -4.92 + 0.04)
Location | 21,738,731 – 21,738,830 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 74.65 |
Mean single sequence MFE | -17.76 |
Consensus MFE | -2.26 |
Energy contribution | -2.34 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.11 |
Mean z-score | -1.56 |
Structure conservation index | 0.13 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.705143 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21738731 99 - 22224390 UU----GGUUGUCGUCAUUUCAAAACA-AGGUAAUUAAGUAUAAAUCAUUGCUGUAGACGCAACAUAUUUUGCAAAAGUUUAUCGUGACAACUAUUAGGCGAA-A .(----((((((((..((....((((.-..((.....((((........))))....))((((......))))....))))))..))))))))).........-. ( -17.20) >DroSec_CAF1 30351 83 - 1 UU----GGUUG---UCAUUGCAAAACAAAGGUAAUUAAGUAUAAAUA--------------UAUAUAUUUUGCAAAAGUUUAUCAUGACAACUAUUAGGCGAA-A .(----(((((---(((((((((((.....(((.(((....))).))--------------).....)))))))..........)))))))))).........-. ( -15.90) >DroSim_CAF1 30746 82 - 1 UU----GGUUG---UCAUUGCAAAACA-AGGUAAUUAAGUAUAAAUA--------------UAUAUAUUUUGCAAAAGUUUAUCAUGACAACUAUUAGGCGAA-A .(----(((((---(((((((((((..-..(((.(((....))).))--------------).....)))))))..........)))))))))).........-. ( -15.50) >DroEre_CAF1 29586 97 - 1 UU----GGUAGUCAUCAUUGCAAGACG-AUGUACUUAAGUAUAGAUUAUUGC---ACAAGCAACAUAUUCUGCAAAAGUUUAUCAUAACAACUAUAAAGCGAAAA .(----(((((.(.....(((((....-.(((((....))))).....))))---)...(((........)))....).)))))).................... ( -14.70) >DroYak_CAF1 30730 101 - 1 UUGGUUGGUUGUCAUCAUUGCAAAACA-UAGCA---UAGCAUAGAUCAUUGCUGUACAACCAACAUAUUCUGCAAAAGUGUGUCAUAACCACUAUUAGGCGAAAA ...(((((((((.......((......-..))(---(((((........)))))))))))))))...(((.((...((((.((....)))))).....))))).. ( -25.50) >consensus UU____GGUUGUC_UCAUUGCAAAACA_AGGUAAUUAAGUAUAAAUAAUUGC___A_A__CAACAUAUUUUGCAAAAGUUUAUCAUGACAACUAUUAGGCGAA_A ....................................................................(((((...((((.........)))).....))))).. ( -2.26 = -2.34 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:09:08 2006