Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 21,695,445 – 21,695,546 |
Length | 101 |
Max. P | 0.585856 |
Location | 21,695,445 – 21,695,546 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 79.21 |
Mean single sequence MFE | -40.27 |
Consensus MFE | -23.93 |
Energy contribution | -25.05 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.54 |
Mean z-score | -1.60 |
Structure conservation index | 0.59 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.585856 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21695445 101 + 22224390 AAAAAACUCCAAGCAACCGCGGCGUCCGCUGAAGCUGCGGUGACAGCAAGCGCAUUUUUGGCCGGCUCUGGGUGCGCGGAAAGUGGUGGUUCCCAGGAUCC .......(((..(.((((((.((.(((((((..((....))..))))..((((((((..((....))..)))))))))))..)).)))))).)..)))... ( -38.10) >DroSec_CAF1 74 101 + 1 AAAAAACUCCAAGCAGCCACGGCAGCCGCUGGAGCUGCGAUGACAGCAACAGCGGUUUUGCCCGGCUCUGGGUGCGCAGAAAGUGGUGGUUCCCAGGAUCC .......(((.((.((((..(((((((((((..((((......))))..)))))))..)))).))))))(((..(((........)))...))).)))... ( -41.80) >DroSim_CAF1 71 101 + 1 AAAAAACUCCAAGCAGCCACGGCAGCCGCUGGAGCUGCGAUGACAGCAACAGCGGUUUUGCCCGGCUCUGGGUGCGCAGAAAGUGGUGGUUCCCAGGAUCC .......(((.((.((((..(((((((((((..((((......))))..)))))))..)))).))))))(((..(((........)))...))).)))... ( -41.80) >DroEre_CAF1 322 101 + 1 AAAAAACUCGAAGCAGCCGCGGCGGCCGCUGGAGCUGCCGUGACCGCAGCAGCGGUUUUGCCCGGCUCUGAGUGCGUGGAAAGUGGUGCUUCCAAGGAUCC .........((((((.((((..(.(((((((((((((.((.((((((....)))))).))..))))))).)))).)).)...))))))))))......... ( -42.90) >DroYak_CAF1 71 98 + 1 AAAAAACUCGAAGCAGCCGCGGCGGCCGCUGGAGCUGCGGUGACUGCAGCAGCGGUUUUACCCGGAUCUGAUUGUGAGGAAAGUGGU---UUUAAGGAUCC ......((((...((((((.((.(((((((...((((((....).))))))))))))...)))))..)))....)))).........---........... ( -32.90) >DroAna_CAF1 71 101 + 1 AAAAAGCUCGAAGCCGCUGCUGCUGCCGCUGGAGCAGCCGUAACUGCCGUUACGGCUCUGCCCGGAUCCAAUAUCCCGGAAAGCUUGGGCGCCCACGAGCC .....(((((..((.((....)).))((((.(((((((((((((....)))))))))....((((..........))))...)))).))))....))))). ( -44.10) >consensus AAAAAACUCCAAGCAGCCGCGGCGGCCGCUGGAGCUGCGGUGACAGCAACAGCGGUUUUGCCCGGCUCUGAGUGCGCGGAAAGUGGUGGUUCCCAGGAUCC .......(((..(.((((((.((((((((((..((((......))))..)))))))).........((((......))))..)).)))))).)..)))... (-23.93 = -25.05 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:56 2006