Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 21,690,881 – 21,690,979 |
Length | 98 |
Max. P | 0.544811 |
Location | 21,690,881 – 21,690,979 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 73.45 |
Mean single sequence MFE | -19.69 |
Consensus MFE | -10.75 |
Energy contribution | -11.53 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.20 |
Mean z-score | -1.47 |
Structure conservation index | 0.55 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.544811 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21690881 98 + 22224390 GAGAGAAAA--AAUCGUUAACAAAAAUAUAAGCGCACACUUAUAUUUUUAACACGCGGCAAAGUUGCGUGCGUGGG--GGUGAGAGUGAAAAAUGUAAAAAC .........--..(((((.(((((((((((((......)))))))))))..(((((((((....))).))))))..--.))...)))))............. ( -20.50) >DroSec_CAF1 2051 99 + 1 GAGAGAAAAAGAAUCGUUAACAAUAAUAUUAGC-CACACUUUUAUUUUUAACACGCGGCAAAGUCGCGUGCGUGUG--UGUGAGAGUGAAAUAUGUAAAAGC ...............(((((........)))))-..(((((((((.....(((((((((......)).))))))).--.))))))))).............. ( -22.70) >DroSim_CAF1 2134 99 + 1 GAGAGAAAAAGAAUCGUUAACAAUAAUAUUAGC-CACACUUUUAUUUUUAACACGCGGCAAAGUCGCGUGCGUGUG--UGUGAGAGUGAAAUAUGUAAAAGC ...............(((((........)))))-..(((((((((.....(((((((((......)).))))))).--.))))))))).............. ( -22.70) >DroEre_CAF1 1398 88 + 1 GGGAGAA--------------GAAAAUAUAAGCGCACCCUCUUAUUUUUAACACACGGCAAAGUUGCGUGCGUGUGUGUGUGCGAGUGAAAAAUGUAAAAAC .......--------------.....(((..((((((.............((((((((((....)))...)))))))))))))..))).............. ( -18.11) >DroYak_CAF1 1754 98 + 1 GAGAAAA--AGAAUUGUUAACGAAAAGAAAAGCGCACCCUCUUAUUUUUAACACGCGGCAAAGUUGCGUGCGUAUG--UGUGAGAGUGAAAAAUGUAAAAAC .......--...........................(.(((((((...((.((((((((...))))))))..))..--.))))))).).............. ( -17.10) >DroPer_CAF1 10391 79 + 1 GAAGCAA--AAGAUUAUUAAUAAAAAUACAAAA-CACA-------UUUUAACACGCGACAAGUGCGUGUGUGUGU----GUGUGAGAGAGAGA--------- .......--.......................(-((((-------(....(((((((.....)))))))....))----))))..........--------- ( -17.00) >consensus GAGAGAA__AGAAUCGUUAACAAAAAUAUAAGC_CACACUUUUAUUUUUAACACGCGGCAAAGUCGCGUGCGUGUG__UGUGAGAGUGAAAAAUGUAAAAAC ..................................(((.(((.........(((((((((......)).)))))))......))).))).............. (-10.75 = -11.53 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:54 2006