Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 21,684,735 – 21,684,839 |
Length | 104 |
Max. P | 0.983681 |
Location | 21,684,735 – 21,684,839 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 85.94 |
Mean single sequence MFE | -19.34 |
Consensus MFE | -14.54 |
Energy contribution | -15.54 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.80 |
Structure conservation index | 0.75 |
SVM decision value | 1.95 |
SVM RNA-class probability | 0.983681 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21684735 104 + 22224390 AU------AAUAAUAAGAACGGAGCCAAACACUAACGCCCAACUGAGCAGCAACAACAGCAACUACAGCCAUACAA-AACGUAAAAAACACC-AAGUUGUUUGGCCUUCGAU ..------...........((((((((((((((.........(((((..((.......))..)).)))...(((..-...))).........-.)).))))))).))))).. ( -20.10) >DroSec_CAF1 6395 95 + 1 AU------AAUAAUAAGAACGGAGCCAAACACUAACGCCCAACUGAGCAGCAACAACAG---------CCACACAAAAACGUAUAAAA-AGC-AAGUUGUUUGGCCUUCGAU ..------...........((((((((((((((...((.(....).)).((.......)---------)...................-...-.)).))))))).))))).. ( -17.70) >DroSim_CAF1 6508 95 + 1 AU------AAUAAUAAGAACGGAGCCAAACACUAACGCCCAACUGAGCAGCAACAACAG---------CCACACAAAAACGUAUAAAA-AGC-AAGUUGUUUGGCCUUCGAU ..------...........((((((((((((((...((.(....).)).((.......)---------)...................-...-.)).))))))).))))).. ( -17.70) >DroEre_CAF1 6446 105 + 1 AU---AAUAAUAACAAAAACGGAGCCAAAAACUAACGCCCCACAGAGCAGCAACAACAA---CUAGAGCUAUACAAAAACGUAUAAAA-AGCUAAGUUGUUUGGCCUUCGAU ..---..............(((((((((........((........)).......((((---((..((((((((......))))....-)))).)))))))))).))))).. ( -21.50) >DroYak_CAF1 6465 108 + 1 AUAAUAAUAAUAACAAAAACGGAGCCAAAAACUAACGCCCAACAGAGCAGCAACAACAA---CUAGAGCUAUACAAAAACGUAUAAAA-AGCAAAGUUGUUUGGCCUUCGAU ...................(((((((((........((.(....).)).......((((---((...(((((((......))))....-)))..)))))))))).))))).. ( -19.70) >consensus AU______AAUAAUAAGAACGGAGCCAAACACUAACGCCCAACUGAGCAGCAACAACAG___CUA_AGCCAUACAAAAACGUAUAAAA_AGC_AAGUUGUUUGGCCUUCGAU ...................((((((((((((((...((.(....).))......................((((......))))..........)).))))))).))))).. (-14.54 = -15.54 + 1.00)
Location | 21,684,735 – 21,684,839 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 85.94 |
Mean single sequence MFE | -24.48 |
Consensus MFE | -19.59 |
Energy contribution | -19.31 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.08 |
Mean z-score | -1.74 |
Structure conservation index | 0.80 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.770395 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21684735 104 - 22224390 AUCGAAGGCCAAACAACUU-GGUGUUUUUUACGUU-UUGUAUGGCUGUAGUUGCUGUUGUUGCUGCUCAGUUGGGCGUUAGUGUUUGGCUCCGUUCUUAUUAUU------AU ...((((((((((((....-.(((.....)))...-..((.((((((.(((.((.......)).))))))))).)).....)))))))))...)))........------.. ( -24.90) >DroSec_CAF1 6395 95 - 1 AUCGAAGGCCAAACAACUU-GCU-UUUUAUACGUUUUUGUGUGG---------CUGUUGUUGCUGCUCAGUUGGGCGUUAGUGUUUGGCUCCGUUCUUAUUAUU------AU ...((((((((((((.((.-((.-................(..(---------(....))..).((((....)))))).)))))))))))...)))........------.. ( -24.70) >DroSim_CAF1 6508 95 - 1 AUCGAAGGCCAAACAACUU-GCU-UUUUAUACGUUUUUGUGUGG---------CUGUUGUUGCUGCUCAGUUGGGCGUUAGUGUUUGGCUCCGUUCUUAUUAUU------AU ...((((((((((((.((.-((.-................(..(---------(....))..).((((....)))))).)))))))))))...)))........------.. ( -24.70) >DroEre_CAF1 6446 105 - 1 AUCGAAGGCCAAACAACUUAGCU-UUUUAUACGUUUUUGUAUAGCUCUAG---UUGUUGUUGCUGCUCUGUGGGGCGUUAGUUUUUGGCUCCGUUUUUGUUAUUAUU---AU ...((.(((..(((((((.((((-....(((((....)))))))))..))---)))))...)))..))...(((((...........)))))...............---.. ( -24.50) >DroYak_CAF1 6465 108 - 1 AUCGAAGGCCAAACAACUUUGCU-UUUUAUACGUUUUUGUAUAGCUCUAG---UUGUUGUUGCUGCUCUGUUGGGCGUUAGUUUUUGGCUCCGUUUUUGUUAUUAUUAUUAU ..((..((((((((((((..(((-....(((((....))))))))...))---)))))......((((....)))).........))))).))................... ( -23.60) >consensus AUCGAAGGCCAAACAACUU_GCU_UUUUAUACGUUUUUGUAUGGCU_UAG___CUGUUGUUGCUGCUCAGUUGGGCGUUAGUGUUUGGCUCCGUUCUUAUUAUU______AU ..((..(((((((((((.........(((((((....)))))))...........))))))...((((....)))).........))))).))................... (-19.59 = -19.31 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:52 2006