Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 21,677,251 – 21,677,371 |
Length | 120 |
Max. P | 0.664386 |
Location | 21,677,251 – 21,677,360 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 83.91 |
Mean single sequence MFE | -38.77 |
Consensus MFE | -28.65 |
Energy contribution | -31.27 |
Covariance contribution | 2.61 |
Combinations/Pair | 1.12 |
Mean z-score | -1.79 |
Structure conservation index | 0.74 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.569317 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21677251 109 + 22224390 UGCUUAGCCUGAACAAUUGCCCGGGCACAACGCCCGGCACGCCGAUGAGCAAAAAUCAGCUUAAGAAGCAGCGAAAGCUGGCGGAGUUUGCCGAACUCCGGAAGCUGCG ((((((..(.(......((((.((((.....))))))))..).).)))))).....((((((......((((....)))).((((((((...)))))))).)))))).. ( -43.50) >DroPse_CAF1 7056 109 + 1 UCCUCAGCCUAAACAACUGUCCCGGAACUACGCCCGGCACCCCGCAGAGCAAGAACCAACUGAAGAAGCAGAAAAAACUGGCCGAGUUUGCGGAGCUCAAGAAGUUGCG .............(((((((.((((........)))).)).(((((((((.((......(((......)))......)).))....))))))).........))))).. ( -23.10) >DroSim_CAF1 7303 109 + 1 UGCGUACCCUGAACAAUUGCCCGGGCACAACGCCCGGCACGCCGAUGAGCAAAAAUCAGCUUAAGAAGCAACGCAAGCUGGCGGAGUUUGCUGAACUCCGGAAGCUGCG (((((............((((.((((.....)))))))).((...(((((........)))))....)).)))))((((..((((((((...))))))))..))))... ( -41.30) >DroEre_CAF1 6728 109 + 1 UGCUCAGCUUGAGCAAUUGCCCGGGCACGACGCCCGGGACGCCGCUGAGCAAAAACCAGCUUAAGAAGCAGCGCAAGCUGGCGGAGAUUGCCGAACUCCGGAAGCUGCG ((((((((..(.((.....(((((((.....)))))))..))))))))))).....((((((......((((....)))).(((((.........))))).)))))).. ( -52.70) >DroYak_CAF1 7322 109 + 1 UGCUCAGCUUGAGCAAUUGCCCGGGCACGACGCCCGGAACGCCCCUGAGCAAAAAUCAGCUAAAGAAGCAGCGCAAGCUGGCGGAGUUUGCUGAACUCCGGAAGCUGCG (((((((.....((....))((((((.....)))))).......))))))).....(((((.......((((....)))).((((((((...))))))))..))))).. ( -48.90) >DroPer_CAF1 7065 109 + 1 UCCUCAGCCUAAACAACUGUCCCGGAACUACGCCCGGCACCCCGCAGAGCAAGAACCAACUGAAGAAGCAGAAAAAACUGGCCGAGUUUGCGGAGCUCAAGAAGUUGCG .............(((((((.((((........)))).)).(((((((((.((......(((......)))......)).))....))))))).........))))).. ( -23.10) >consensus UGCUCAGCCUGAACAAUUGCCCGGGCACAACGCCCGGCACGCCGCUGAGCAAAAACCAGCUUAAGAAGCAGCGAAAGCUGGCGGAGUUUGCCGAACUCCGGAAGCUGCG ((((((((....((....))((((((.....))))))......)))))))).....(((((.......((((....)))).((((((((...))))))))..))))).. (-28.65 = -31.27 + 2.61)
Location | 21,677,280 – 21,677,371 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 85.49 |
Mean single sequence MFE | -32.78 |
Consensus MFE | -21.76 |
Energy contribution | -23.08 |
Covariance contribution | 1.32 |
Combinations/Pair | 1.23 |
Mean z-score | -2.03 |
Structure conservation index | 0.66 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.664386 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21677280 91 + 22224390 ACGCCCGGCACGCCGAUGAGCAAAAAUCAGCUUAAGAAGCAGCGAAAGCUGGCGGAGUUUGCCGAACUCCGGAAGCUGCGACGCGAACGGG ...((((...(((.(((........)))(((((......((((....)))).((((((((...)))))))).))))).....)))..)))) ( -35.20) >DroSec_CAF1 6668 91 + 1 ACGCCCGGCACGCCGAUGAGCAAAAAUCAGCUUAAGAAGCAGCGCAAGCUGGCGGAGUUUGCUGAACUCCGGAAGCUGCGACGCGAACGGG ...((((...(((...(((((........))))).......(((((.(((..((((((((...))))))))..))))))).))))..)))) ( -35.50) >DroSim_CAF1 7332 91 + 1 ACGCCCGGCACGCCGAUGAGCAAAAAUCAGCUUAAGAAGCAACGCAAGCUGGCGGAGUUUGCUGAACUCCGGAAGCUGCGACGCGAACGGG ...((((...(((...(((((........)))))........((((.(((..((((((((...))))))))..)))))))..)))..)))) ( -35.60) >DroYak_CAF1 7351 91 + 1 ACGCCCGGAACGCCCCUGAGCAAAAAUCAGCUAAAGAAGCAGCGCAAGCUGGCGGAGUUUGCUGAACUCCGGAAGCUGCGUCGCGAACGGG ...((((........((((.......))))........((.(((((.(((..((((((((...))))))))..)))))))).))...)))) ( -35.00) >DroAna_CAF1 7034 91 + 1 ACACCUGGCACCCCCCAGAGCAAAAAUCAAUUGAAGAAACAGCGUAAAAUGGCCGAGUACGCGGAGUUGCGGAAACUCCGGCGUGAAAAAG .(((((((......)))).((....................(((((...........)))))((((((.....)))))).)))))...... ( -22.60) >consensus ACGCCCGGCACGCCGAUGAGCAAAAAUCAGCUUAAGAAGCAGCGCAAGCUGGCGGAGUUUGCUGAACUCCGGAAGCUGCGACGCGAACGGG ...((((.........(((((........)))))....((..((((.(((..((((((((...))))))))..)))))))..))...)))) (-21.76 = -23.08 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:50 2006