Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 21,439,246 – 21,439,366 |
Length | 120 |
Max. P | 0.987023 |
Location | 21,439,246 – 21,439,366 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 61.82 |
Mean single sequence MFE | -41.23 |
Consensus MFE | -19.20 |
Energy contribution | -19.53 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.11 |
Mean z-score | -1.74 |
Structure conservation index | 0.47 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.755762 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21439246 120 + 22224390 UGGCCAGUUGAACGGGGGCAGGAGCCCCUGGCGACUGAACAGCCAAAAAUGCGUCCUGUGGCGAUUGAACAGCCACCGGGGAGGCCGAUGUCGGAUAUAAAGCCACCGGAGAAGACUGCU ((((((((((..(((((((....))))))).))))))....)))).....(((((...((((.........))))((((((...(((....)))........)).))))....))).)). ( -47.30) >DroSim_CAF1 6763 90 + 1 UCGGCACUUGAACGGGGACAGGAGUCGAUGGCUGCUGAACAGCCACCGGAGUGGCCGGUGUCGGAUAUGAAGCCACCGG------------------------------AGGAGACUGCU ..(((.......(((((.((....((((((((((.....)))))(((((.....))))))))))...))...)).))).------------------------------((....))))) ( -32.80) >DroYak_CAF1 13060 90 + 1 UCGCCACUUGAACGGGGACAGGAGCCGGUGGCGACUGAACAGCCACCGGGGCAGCCGGUGCCUGAAAUUCAGCCACCGG------------------------------AAGAGCCUCCU ((.((........)).)).((((.((((((((.........))))))))(((..((((((.(((.....))).))))))------------------------------....))))))) ( -43.60) >consensus UCGCCACUUGAACGGGGACAGGAGCCGAUGGCGACUGAACAGCCACCGGAGCGGCCGGUGCCGGAUAUACAGCCACCGG______________________________AGGAGACUGCU ............(((((.(((..(((...)))..)))....(.((((((.....)))))).)..........)).))).......................................... (-19.20 = -19.53 + 0.34)
Location | 21,439,246 – 21,439,366 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 61.82 |
Mean single sequence MFE | -38.87 |
Consensus MFE | -20.75 |
Energy contribution | -20.20 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.32 |
Mean z-score | -1.79 |
Structure conservation index | 0.53 |
SVM decision value | 2.06 |
SVM RNA-class probability | 0.987023 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21439246 120 - 22224390 AGCAGUCUUCUCCGGUGGCUUUAUAUCCGACAUCGGCCUCCCCGGUGGCUGUUCAAUCGCCACAGGACGCAUUUUUGGCUGUUCAGUCGCCAGGGGCUCCUGCCCCCGUUCAACUGGCCA ..((((.......(((((((..(((.((((.....((.(((...(((((.........))))).))).))....)))).)))..))))))).(((((....)))))......)))).... ( -44.50) >DroSim_CAF1 6763 90 - 1 AGCAGUCUCCU------------------------------CCGGUGGCUUCAUAUCCGACACCGGCCACUCCGGUGGCUGUUCAGCAGCCAUCGACUCCUGUCCCCGUUCAAGUGCCGA .(.((((.((.------------------------------..)).)))).)...........((((.(((..((((((((.....))))))))(((....)))........))))))). ( -29.80) >DroYak_CAF1 13060 90 - 1 AGGAGGCUCUU------------------------------CCGGUGGCUGAAUUUCAGGCACCGGCUGCCCCGGUGGCUGUUCAGUCGCCACCGGCUCCUGUCCCCGUUCAAGUGGCGA (((((((....------------------------------((((((.(((.....))).))))))..)))((((((((.........)))))))).)))).((.(((......))).)) ( -42.30) >consensus AGCAGUCUCCU______________________________CCGGUGGCUGAAUAUCCGACACCGGCCGCACCGGUGGCUGUUCAGUCGCCACCGGCUCCUGUCCCCGUUCAAGUGGCGA .((((....................................((((((.(.........).)))))).....((((((((.........))))))))...))))................. (-20.75 = -20.20 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:39 2006