Locus 8616

Sequence ID X_DroMel_CAF1
Location 21,415,407 – 21,415,500
Length 93
Max. P 0.999068
window14165

overview

Window 5

Location 21,415,407 – 21,415,500
Length 93
Sequences 3
Columns 101
Reading direction forward
Mean pairwise identity 74.17
Mean single sequence MFE -31.47
Consensus MFE -21.80
Energy contribution -23.14
Covariance contribution 1.34
Combinations/Pair 1.17
Mean z-score -2.29
Structure conservation index 0.69
SVM decision value 3.35
SVM RNA-class probability 0.999068
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21415407 93 + 22224390
AGUUUACAGGGAAUUCGAUCCUGUGGCUUCGCUUAUACAUUGCUUACACACAAACAAAAGGCAUUCUUUUAAGCCAUU-------GUGUGUGUGUGUGGG-
((((.((((((.......))))))))))..............((((((((((.(((...(((..........)))...-------.))).))))))))))- ( -25.70)
>DroEre_CAF1 11224 97 + 1
AGUUUACAGGGUAUUCGAUCCU-UGGCUUCGCUUUUACAUUACUCACGC--ACACAAGCGGACAGCUUACAAACGUU-UGCAUGCGUGUGUGUGUGUGUGG
......(((((........)))-))...............(((.(((((--(((((.(((....((..((....)).-.)).))).)))))))))).))). ( -30.70)
>DroYak_CAF1 3703 98 + 1
AG--UACAGGGUAAUCGAUCCUGUGGCUUCGCUUUUACAUUACUCACACACACACAAAUGAAAGGCUUACAAUCGCG-CGCGAGUGUGUGUGUGUGUGGGG
..--((((((((.....)))))))).................(((((((((((((....((..(.....)..))(((-(....))))))))))))))))). ( -38.00)
>consensus
AGUUUACAGGGUAUUCGAUCCUGUGGCUUCGCUUUUACAUUACUCACACACACACAAAAGGAAAGCUUACAAACGAU__GC__G_GUGUGUGUGUGUGGGG
....((((((((.....)))))))).................((((((((((((((........((........))..........)))))))))))))). (-21.80 = -23.14 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:38 2006