Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 21,405,682 – 21,405,786 |
Length | 104 |
Max. P | 0.706790 |
Location | 21,405,682 – 21,405,786 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 95.02 |
Mean single sequence MFE | -20.50 |
Consensus MFE | -18.06 |
Energy contribution | -17.95 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.08 |
Mean z-score | -2.07 |
Structure conservation index | 0.88 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.706790 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21405682 104 + 22224390 AUUUGAGCAUGACGCACAUAAUUCAAACGCAUCAAAGCCAAUGCAUUGAGAAAA---AAGACAAUUUUUGCAAAUAUUGUCCUCGAGUUUGGAACUUGAGUUUUAAA (((..((.(((.....)))..(((((((((((........)))).(((((....---..((((((..........)))))))))))))))))).))..)))...... ( -18.50) >DroSec_CAF1 55958 107 + 1 AUUUGAGCAUGACGCACAUAAUUCAAACGCAUCAAAGCCAAUGCAUUGAGAAAAACAAAAACAAUUUUUGCAAAUAUUGUGCUCGAAUUUGAAACUUAAGUUUUAAA (((((((((..(.........(((((..((((........)))).))))).....(((((.....)))))......)..)))))))))(((((((....))))))). ( -21.50) >DroSim_CAF1 24062 107 + 1 AUUUGAGCAUGACGCACAUAAUUCAAACGCAUCAAAGCCAAUGCAUUGAGAAAAACAAAAACAAUUUUUGCAAAUAUUGUGCUCGAAUUUGAAACUUAAGUUUUAAA (((((((((..(.........(((((..((((........)))).))))).....(((((.....)))))......)..)))))))))(((((((....))))))). ( -21.50) >consensus AUUUGAGCAUGACGCACAUAAUUCAAACGCAUCAAAGCCAAUGCAUUGAGAAAAACAAAAACAAUUUUUGCAAAUAUUGUGCUCGAAUUUGAAACUUAAGUUUUAAA (((((((((..(.((.............)).((((.((....)).))))...........................)..)))))))))(((((((....))))))). (-18.06 = -17.95 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:36 2006