Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 21,371,134 – 21,371,239 |
Length | 105 |
Max. P | 0.653271 |
Location | 21,371,134 – 21,371,239 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.22 |
Mean single sequence MFE | -20.46 |
Consensus MFE | -15.77 |
Energy contribution | -15.53 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.06 |
Mean z-score | -1.60 |
Structure conservation index | 0.77 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.653271 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21371134 105 - 22224390 -UUCCUUCUCCGCACUUUUUUUUUCU--------CCAACUUCUGCUCCUUUUCCCCG------ACAUCCUGUUAUCGCCAUCGCCCAUUGUCAGGCUAAUUCAUGUGUCGGCUGCAGGAU -.........................--------.....((((((.........(((------((((...((((..(((...((.....))..)))))))....)))))))..)))))). ( -17.80) >DroSec_CAF1 15379 101 - 1 CUUCCUUCUCCGCGCUC-----UUCU--------CCAACUUCUGCUCCUUUUCCCCG------ACAUCCUGUUAUCGCCAUCGCCCAUUGUCAGGCUAAUUCAUGUGUCGGCUGCAGGAU .................-----....--------.....((((((.........(((------((((...((((..(((...((.....))..)))))))....)))))))..)))))). ( -17.80) >DroEre_CAF1 7975 115 - 1 CUUCCUUCUCCGCAUUU-----UUCUCUGCUCCUGUGACUUCUGCUCCUUUUCCUCGACGUCGACAUCCUGUUAUCGCCAUCGCCCAUUGUCAGGCUAAUUCAUGUGUCGACUGCAGGAU ...........(((...-----.....)))(((((((((....).))............((((((((...((((..(((...((.....))..)))))))....)))))))).)))))). ( -23.00) >DroYak_CAF1 7307 101 - 1 CUUCCUUCGCCGCAUUU-----UUCU--------ACAACUUCUGCUCCUUUUCCUCG------ACAUCCUGUUAUCGCCAUGGCCCAUUGUCGGGCUAAUUCAUGUGUCGACUGCAGGAU ...........(((...-----....--------........)))............------..(((((((..((((((((((((......)))).....)))).).)))..))))))) ( -23.26) >consensus CUUCCUUCUCCGCACUU_____UUCU________CCAACUUCUGCUCCUUUUCCCCG______ACAUCCUGUUAUCGCCAUCGCCCAUUGUCAGGCUAAUUCAUGUGUCGACUGCAGGAU .................................................................(((((((..(((.(((.(((........)))........))).)))..))))))) (-15.77 = -15.53 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:08:13 2006