Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 21,310,461 – 21,310,559 |
Length | 98 |
Max. P | 0.704739 |
Location | 21,310,461 – 21,310,559 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 96.21 |
Mean single sequence MFE | -22.62 |
Consensus MFE | -18.90 |
Energy contribution | -18.90 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.55 |
Structure conservation index | 0.84 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.704739 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21310461 98 + 22224390 AACAACAAUGAAGUGCAGCCUGCUUAGAAUAGCAAUUAAGGCGAUGAGAGUCGUCGACUCGGAGCCAAAAAGGAAAGGAAAGCCAAGUUUGGGGACAA ............((.(..((((((......)))).....((((((....)))))).....))..(((((..((.........))...)))))).)).. ( -21.90) >DroSec_CAF1 57429 93 + 1 AACAACAAUGAAGUGCAGCCUGCUUAGAAUAGCAAUUAAGGCGAUGAGAGUCGUCGACUCGGAGCCAAAAAG-----GAAAGCCAAGUUUGGGGACAA ............((.(..((((((......)))).....((((((....)))))).....))..(((((..(-----(....))...)))))).)).. ( -22.70) >DroSim_CAF1 48285 93 + 1 AACAACAAUGAAGUGCAGCCUGCUUAGAAUAGCAAUUAAGGCGAUGAGAGUCGUCGACUCGGAGCCAAAAAG-----GAAAGCCAAGUUUGGGGACAA ............((.(..((((((......)))).....((((((....)))))).....))..(((((..(-----(....))...)))))).)).. ( -22.70) >DroEre_CAF1 50603 92 + 1 AACAACAAUGGAGUGCAGCCUGCUUAGAAUAGCAAUUAAGGCGAUGAGAGUCGUCGACUCGCAGCCAA-AAG-----GAAAGCCAAGUUUGGGGACAA ...(((..(((..(((....((((......)))).....((((((....)))))).....))).))).-..(-----(....))..)))((....)). ( -24.10) >DroYak_CAF1 53678 93 + 1 AACAACAAUGAAGUGCAGCCUGCUUAGAAUAGCAAUUAAGGCGAUGAGAGUCGUCGACUCGGAGCCAAAAAG-----GAAAGCCAAGUUUGGAGACAA ....................((((......)))).....((((((....))))))((((.((..((.....)-----)....)).))))((....)). ( -21.70) >consensus AACAACAAUGAAGUGCAGCCUGCUUAGAAUAGCAAUUAAGGCGAUGAGAGUCGUCGACUCGGAGCCAAAAAG_____GAAAGCCAAGUUUGGGGACAA ............(.((....((((......)))).....(((.....(((((...)))))...)))...............)))....(((....))) (-18.90 = -18.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:59 2006