Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 21,303,447 – 21,303,546 |
Length | 99 |
Max. P | 0.938984 |
Location | 21,303,447 – 21,303,546 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 90.85 |
Mean single sequence MFE | -23.32 |
Consensus MFE | -23.66 |
Energy contribution | -24.14 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.08 |
Mean z-score | -1.33 |
Structure conservation index | 1.01 |
SVM decision value | 1.27 |
SVM RNA-class probability | 0.938984 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21303447 99 + 22224390 GCGAUGAACAUAAUAAAACGAAAUCGAGGAGGCAGUAAAAGCCAGAAAGGGAAAAAACUCACACUGGCUCAAGCUUUUUCGACAAGGUCCUUGCCAUGG .......................((((((((((......((((((...(((......)))...))))))...))))))))))((.(((....))).)). ( -24.70) >DroSec_CAF1 45052 98 + 1 GCGAUGAACAUAAUAAAACGAAAUCGAGGAGGCAGUAAAAGCCAGAAAGGGAA-AAUCUCACACUGGCUCAAGCUUUUUCGACAAGGUCCUUGCCAUGG .......................((((((((((......((((((...(((..-...)))...))))))...))))))))))((.(((....))).)). ( -25.50) >DroSim_CAF1 42568 98 + 1 GCGAUGAACAUAAUAAAACGAAAUCGAGGAGGCAGUAAAAGCCAGAAAGGGAA-AAUCUCACACUGGCUCAAGCUUUUUCGACAAGGUCCUUGCCAUGG .......................((((((((((......((((((...(((..-...)))...))))))...))))))))))((.(((....))).)). ( -25.50) >DroEre_CAF1 43045 87 + 1 -----GAACAAAAUAA-----AAUCGA-GGGGCAGUAAAAGCCAGAAAGGGAA-AAUCCCACACCGGCUCAAGCUUUUUCGACAAGGUCCUGGCCGUGG -----...........-----..((((-(((((.......))).....(((..-...)))...))(((....)))...))))((.(((....))).)). ( -21.00) >DroYak_CAF1 46113 98 + 1 GCGAUGAACAAAAUAAAACGAAAUCGAUGAGGCAGUAAAAGCCGGAAAGGGAA-AAUCUCACACGGGCUCAAGCUUUUUCGACAAGGUCCUUGCCGUGG .......................((((.(((((......((((.(...(((..-...)))...).))))...))))).))))((.(((....))).)). ( -19.90) >consensus GCGAUGAACAUAAUAAAACGAAAUCGAGGAGGCAGUAAAAGCCAGAAAGGGAA_AAUCUCACACUGGCUCAAGCUUUUUCGACAAGGUCCUUGCCAUGG .......................((((((((((......((((((...(((......)))...))))))...))))))))))((.(((....))).)). (-23.66 = -24.14 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:48 2006