Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 21,266,587 – 21,266,683 |
Length | 96 |
Max. P | 0.922016 |
Location | 21,266,587 – 21,266,683 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 78.95 |
Mean single sequence MFE | -26.91 |
Consensus MFE | -18.09 |
Energy contribution | -18.65 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.20 |
Mean z-score | -2.03 |
Structure conservation index | 0.67 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.922016 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21266587 96 - 22224390 UCCCUU----------------GUGCGCAGGUGUGCGUGUGAGGAUGCAUUUUAUAUUAAAUAAUGAAGUGUGUAAAAUGUAUGCAGUGGCACACAAAAAGAGCAAAGAGGC ..((((----------------.((((((....)))(((((.(.(((((((((((((.............))))))))))))).).....))))).......)))..)))). ( -27.42) >DroPse_CAF1 21683 108 - 1 UCCUUUCAAUGUGAUUCCGAGUAUGCGUGAGUGCGUAUUUGGGAAUGCAUUUUUUAAUAAAUAUUGAAGAGCCCACCUUAUAUGCCCCAACAAACCCAAAGAGAGA----AA ..(((((.(((((.(((((((((((((....))))))))))))).)))))((((((((....))))))))..............................))))).----.. ( -25.70) >DroSec_CAF1 13022 96 - 1 UCCCUU----------------GUGCGCAGGUGUGCGUGUGGGGAUGCAUUUUAUAUUAAAUAAUGAAGUGUGUACAAUGUAUGCAGUGGCACACAAACCGAGCAAAGAGGC ..((((----------------.(((...(((.((.((((..(.(((((((.(((((.............))))).))))))).)....)))).)).)))..)))..)))). ( -27.22) >DroSim_CAF1 24568 96 - 1 UCCCUU----------------GUGCGCAGGUGUGCGUGUGAGGAUGCAUUUUAUAUUAAAUAAUGAAGUGUGUACAAUGUAUGCAGUGGCACACAAAAGGAGCAAAGAGGC (((.((----------------(((.((..((((((((.((...(((((((((((........))))))))))).))))))))))....)).)))))..))).......... ( -26.90) >DroEre_CAF1 13006 94 - 1 UC-CUU----------------GUGCGCAGGUGUGCGUGUGAGGAUGCAUUUUAUAUUAAAUAAUGAAGUGUGUACAAUGUAUGCAGUGGCACA-AAAAAGAGCAAAGACCA ((-((.----------------.((((((....))))))..))))((((((((((........)))))))((((.((.((....)).)))))).-.......)))....... ( -25.50) >DroYak_CAF1 14647 96 - 1 UCCCCU----------------GUGCGCAGGUGUGCGUGUGAGGAUGCAUUUUAUAUUAAAUAAUGAAGUGUGUACAUUGUAUGCAGUGGCACACAAAAAGAGCAAAGUGGC ..((((----------------.(((....((((((........(((((((((((........))))))))))).(((((....))))))))))).......))).)).)). ( -28.70) >consensus UCCCUU________________GUGCGCAGGUGUGCGUGUGAGGAUGCAUUUUAUAUUAAAUAAUGAAGUGUGUACAAUGUAUGCAGUGGCACACAAAAAGAGCAAAGAGGC ......................((((.((.((((((((......(((((((((((........)))))))))))...))))))))..))))))................... (-18.09 = -18.65 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:35 2006