Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 21,225,117 – 21,225,210 |
Length | 93 |
Max. P | 0.798192 |
Location | 21,225,117 – 21,225,210 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 93.55 |
Mean single sequence MFE | -16.62 |
Consensus MFE | -16.11 |
Energy contribution | -15.93 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.06 |
Mean z-score | -1.52 |
Structure conservation index | 0.97 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.798192 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21225117 93 - 22224390 CUAUCAAAAAAUUUGGCAAAGGAAAUUCCAUUCGUGACCAACUUUUUGCUAAUCCAGGAUUCCGACCUCCUUGGCACUUGCCACACAUAUACA .............((((((.((.....))....(((.(((...............((((........)))))))))))))))).......... ( -16.46) >DroSec_CAF1 34125 93 - 1 CUAUCAAAAAAUUUGGCAAAGGAAAUUCCAUUCGUGACCAAAUUUUUGCUAAUCCAGGACUCCGACCUCCUUGGCACUUGCCACACACACACA ......((((((((((((..((.....)).....)).))))))))))........((((........))))((((....)))).......... ( -18.10) >DroSim_CAF1 28305 91 - 1 CUAUCAAAAAAUUUGGCAAAGGAAAUUCCAUUCGUGACCAACUUUUUGCUAAUCCAGGACUCCGACCUCCUUGGCACUUGCCGCACA--CACA ......(((((.((((((..((.....)).....)).)))).)))))((......((((........)))).(((....)))))...--.... ( -15.80) >DroEre_CAF1 23551 91 - 1 CUAUCAAAAAAUUUGGCAAAGGAAAUUCCAGUCGUGACCAACUUUUUGCUAAUACAGGAUUCCGACCUUCUUGGCACUUGCCACACACACA-- .............((((((.((.....)).................((((((...(((.......)))..)))))).))))))........-- ( -16.10) >consensus CUAUCAAAAAAUUUGGCAAAGGAAAUUCCAUUCGUGACCAACUUUUUGCUAAUCCAGGACUCCGACCUCCUUGGCACUUGCCACACACACACA .............((((((.((.....)).................((((((...(((.......)))..)))))).)))))).......... (-16.11 = -15.93 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:24 2006