Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 21,193,685 – 21,193,793 |
Length | 108 |
Max. P | 0.912416 |
Location | 21,193,685 – 21,193,793 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 73.34 |
Mean single sequence MFE | -34.47 |
Consensus MFE | -25.09 |
Energy contribution | -24.04 |
Covariance contribution | -1.05 |
Combinations/Pair | 1.42 |
Mean z-score | -1.24 |
Structure conservation index | 0.73 |
SVM decision value | 1.08 |
SVM RNA-class probability | 0.912416 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21193685 108 + 22224390 AUGGUAUUU-CCAA-----------ACCUCAGGCUGCUGCGGACUUGGAUGUGCGUAUCAUGGUGGAUGCGGAGCAGACUUACUUCCAGCCGGCCAUCUCCCGUAUCACCCUGGAAAUGA .(((.....-))).-----------...(((((.((.(((((....(((((.(((((((......)))))((((.........)))).....))))))).))))).)).)))))...... ( -31.20) >DroPse_CAF1 12074 119 + 1 CUGGUAUAUUCCACAUCUGAUAUA-UUCCCAGACUGCUGCCGAGCUGGACGUGCGCAUCAUGAUCGAUGCGGAGCAGACCUACUUCCAGCCGGCCAUUUCGCGCAUCACGCUGGAAAUGA ((((((((((........))))))-...))))......((((.((((((.(((.(((((......)))))((......))))).))))))))))(((((((((.....)))..)))))). ( -40.60) >DroGri_CAF1 21032 113 + 1 UAACU-----GCAA--CCCUUCUUUUCUUCAGACUGCUGCUGAGCUGGAUGUGCGCAUUAUGAUUGAUGCAGAGCAAACUUACUUCCAGCCAGCAAUCUCGCGCAUUACGCUUGAGAUGA .....-----(((.--..................)))(((((.((((((.((..((((((....)))))).(((....))))).)))))))))))((((((.((.....)).)))))).. ( -33.71) >DroWil_CAF1 19165 110 + 1 ACGAUUUU----------GCUUUAUUCUCCAGACUGCCGCUGAGCUGGAUGUACGCAUUAUGAUUGAUGCCGAGCAAACCUAUUUCCAGCCAGCCAUUUCGCGCAUCACUUUGGAAAUGA ........----------...(((((.((((((.((((((((.(((((((((.(((((((....))))).)).)))........))))))))))......).)))....))))))))))) ( -27.90) >DroAna_CAF1 17829 105 + 1 ---AUAUUC-UACA-----------CCCCCAGGCUGCUGCCGAGUUGGAUGUCCGUAUUAUGGUGGAUGCGGAGCAAACCUAUUUCCAACCGGCCAUUUCCCGCAUCACCCUGGAGAUGA ---......-..((-----------.(.(((((.(((.((((.((((((((((((((((......)))))))).))........))))))))))........)))....))))).).)). ( -32.70) >DroPer_CAF1 13748 119 + 1 CUGGUAUAUUCCACAUCUGAUAUA-UUCCCAGACUGCUGCCGAGCUGGACGUGCGCAUCAUGAUCGAUGCGGAGCAGACCUACUUCCAGCCGGCCAUUUCGCGCAUCACGCUGGAGAUGA ((((((((((........))))))-...))))......((((.((((((.(((.(((((......)))))((......))))).))))))))))(((((((((.....)))..)))))). ( -40.70) >consensus AUGGUAUUU_CCAA____G_U_UA_UCCCCAGACUGCUGCCGAGCUGGAUGUGCGCAUCAUGAUCGAUGCGGAGCAAACCUACUUCCAGCCGGCCAUUUCGCGCAUCACGCUGGAAAUGA ......................................((((.((((((.(((.(((((......)))))((......))))).))))))))))((((((.............)))))). (-25.09 = -24.04 + -1.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:16 2006