Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 21,167,354 – 21,167,450 |
Length | 96 |
Max. P | 0.786273 |
Location | 21,167,354 – 21,167,450 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 81.26 |
Mean single sequence MFE | -32.62 |
Consensus MFE | -23.34 |
Energy contribution | -24.15 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.12 |
Mean z-score | -1.81 |
Structure conservation index | 0.72 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.786273 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21167354 96 + 22224390 --ACGCUUCUAACAAUU---------GCGUUCCAU-UUAGGUGCGAGGCUUUGUGGGAUGCCACAAGAUGCUGGAGCGGGACAUUUACCUGCUUGUGUGUCUGGCCUU --.(((.(((((.....---------.........-))))).)))(((((.(((((....)))))((((((..(((((((.......)))))))..))))))))))). ( -33.44) >DroVir_CAF1 6404 97 + 1 CUACAG-UCUU-------AUAGAU--AUUUUUUCU-GCAGGUGCGCGGCUUUGUUGGCUGCCACAAGAUGCUGGAGCGUGACAUCUAUUUGCUCGUCUGUUUGGCCUU .....(-((..-------((((((--.........-(((.(((.((((((.....)))))))))....)))..(((((...........)))))))))))..)))... ( -30.70) >DroSec_CAF1 5829 96 + 1 --ACAUUUCUAACAAUU---------GCGUUCCAU-UUAGGUGCGAGGCUUUGUGGGAUGCCACAAGAUGCUGGAGCGGGACAUUUACCUGCUCGUGUGUCUGGCCUU --...............---------.(((.((..-...)).)))(((((.(((((....)))))((((((..(((((((.......)))))))..))))))))))). ( -33.70) >DroSim_CAF1 5747 96 + 1 --ACAUUUCUAACAAUU---------GCCUUCCAU-UUAGGUGCGAGGCUUUGUGGGAUGCCACAAGAUGCUGGAGCGGGACAUUUACCUGCUCGUGUGUCUGGCCUU --.....(((.((((..---------(((((.(((-....))).))))).)))).))).((((...(((((..(((((((.......)))))))..)))))))))... ( -34.40) >DroEre_CAF1 4852 103 + 1 --ACAU-CCUAAAAAUUCC-GUUCAUGCGUUCAUU-UUAGGUGCGAGGCUUUGUGGGAUGCCACAAGAUGCUGGAGCGGGACAUUUACCUGCUGGUGUGUCUGGCCUU --.((.-(((((((....(-((....)))....))-))))))).((((((.(((((....)))))((((((...((((((.......))))))...)))))))))))) ( -35.20) >DroYak_CAF1 4838 102 + 1 --ACAU-CCUUACAAUU---GGAAAUGCGUUCAUUUUUAGGUGCGAGGCUUUGUGGGAUGCCACAAAAUGCUGGAGCGGGACAUUUACCUACUCGUGUGUCUGGCCUU --....-(((..((.((---(((((((....))))))))).))..))).(((((((....))))))).....((.((.((((((............)))))).)))). ( -28.30) >consensus __ACAU_UCUAACAAUU_________GCGUUCCAU_UUAGGUGCGAGGCUUUGUGGGAUGCCACAAGAUGCUGGAGCGGGACAUUUACCUGCUCGUGUGUCUGGCCUU ............................................((((((.(((((....)))))((((((..(((((((.......)))))))..)))))))))))) (-23.34 = -24.15 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:07:02 2006