Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 21,134,588 – 21,134,688 |
Length | 100 |
Max. P | 0.652904 |
Location | 21,134,588 – 21,134,688 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 96.40 |
Mean single sequence MFE | -20.29 |
Consensus MFE | -19.33 |
Energy contribution | -19.49 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -1.14 |
Structure conservation index | 0.95 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.652904 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21134588 100 - 22224390 GAUGCUGCGAAAGUGCGAUAGUAUCGAAUAAACAUGAGUGUGUGCAUGAGUGUGGGAAUUUAUUAAACAAAAACGAAACGCGGACAAACUAUAUUUAUGU (((((((((......)).)))))))......((((((((((((......((((........................))))......)).)))))))))) ( -20.06) >DroSec_CAF1 2213 100 - 1 GAUGCUGCGAAACUGCGAUAGUAUCGAAUAAACAUGAGUGUGUGCAUAAGUGUGGGAAUUUAUUAAACAAAAACGAAACGCGGACAAACUAUAUUUAUGU (((((((((......)).)))))))......((((((((((((......((((........................))))......)).)))))))))) ( -20.06) >DroSim_CAF1 2172 100 - 1 GAUGCUGCGAAACUGCGAUAGUAUCGAAUAAACAUGAGAGUGUGCAUAAGUGUGGGAAUUUAUUAAACAAAAACGAAACGCGGACAAACUAUAUUUAUGU (((((((((......)).)))))))......((((....))))((((((((((((.................................)))))))))))) ( -22.41) >DroEre_CAF1 2561 100 - 1 GAUGCUGCGAAUGCGCGAUAGUAUCGAAUAAACAUGAGUGUGUGCAUGAGUGAGGGAAUUUAUUAAACAAAAACGAAACGCGGACAAACUAUAUUUAUGU (((((((((......)).)))))))......((((((((((((..((((((......))))))...)).....((.....))........)))))))))) ( -19.10) >DroYak_CAF1 2375 100 - 1 GAUGCUGCGAAAGUGCGAUAGUAUCGAGUAAACAUGAGUUUGUGCAUGAGUGUGGGAAUUUAUUAAACAAAAACGAAACGCGGACAAACUAUAUUUAUGU (((((((((......)).)))))))...(((((....))))).((((((((((((.................................)))))))))))) ( -19.81) >consensus GAUGCUGCGAAAGUGCGAUAGUAUCGAAUAAACAUGAGUGUGUGCAUGAGUGUGGGAAUUUAUUAAACAAAAACGAAACGCGGACAAACUAUAUUUAUGU (((((((((......)).)))))))......((((....))))((((((((((((.................................)))))))))))) (-19.33 = -19.49 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:39 2006