Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 21,078,485 – 21,078,602 |
Length | 117 |
Max. P | 0.974495 |
Location | 21,078,485 – 21,078,602 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 98.86 |
Mean single sequence MFE | -40.17 |
Consensus MFE | -38.35 |
Energy contribution | -38.13 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -2.93 |
Structure conservation index | 0.95 |
SVM decision value | 1.73 |
SVM RNA-class probability | 0.974495 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21078485 117 + 22224390 CACAGGUGGAAAAUGAAAUGAAAUCUGCCUUAACCGUGUCUAUCUGGAUAUGGUGUGCAUCUGGAUAGCAAGUUCAGGCGGAAGUUCAUAUGCGAUAUCUUUUACGGCCAUCUGGCA ..(((((((........(((((.(((((((.(((..((.(((((..(((.........)))..))))))).))).)))))))..)))))...((.((.....)))).)))))))... ( -37.90) >DroSec_CAF1 8529 117 + 1 CACAGGUGGAAAACGAAAUGAAAUCUGCCUUAACCGUGUCUAUCUGGAUAUGGUGUGCAUCUGGAUAGCAAGUUCAGGCGGAAGUUCAUAUGCGAUAUCUUUUACGGCCAUCUGGCA ..(((((((....((..(((((.(((((((.(((..((.(((((..(((.........)))..))))))).))).)))))))..)))))....(....).....)).)))))))... ( -38.40) >DroSim_CAF1 8671 117 + 1 CACAGGUGGAAAACGAAAUGAAAUCUGCCUUAACCGUGUCUAUCUGGAUGUGGUGUGCAUCUGGAUAGCAAGUUCAGGCGGAAGUUCAUAUGCGAUAUCUUUUACGGCCAUCUGGCA ..(((((((....((..(((((.(((((((.(((..((.(((((..(((((.....)))))..))))))).))).)))))))..)))))....(....).....)).)))))))... ( -44.20) >consensus CACAGGUGGAAAACGAAAUGAAAUCUGCCUUAACCGUGUCUAUCUGGAUAUGGUGUGCAUCUGGAUAGCAAGUUCAGGCGGAAGUUCAUAUGCGAUAUCUUUUACGGCCAUCUGGCA ..(((((((....((..(((((.(((((((.(((..((.(((((..(((.........)))..))))))).))).)))))))..)))))....(....).....)).)))))))... (-38.35 = -38.13 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:16 2006