Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 21,075,425 – 21,075,528 |
Length | 103 |
Max. P | 0.619095 |
Location | 21,075,425 – 21,075,528 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.80 |
Mean single sequence MFE | -22.93 |
Consensus MFE | -17.15 |
Energy contribution | -18.43 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.03 |
Mean z-score | -1.79 |
Structure conservation index | 0.75 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.619095 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21075425 103 - 22224390 UGAAUGCGCUUUAAUAUAAAGUA-----------------ACUAACUUCAUAAUGGCGUACAAAUGAGAUAUUUAGUGAGUCCCAAAGUUAAGGGCGAAAUAAUUUAAGGAUUUUCAAAA ((((((((((....(((.((((.-----------------....)))).)))..))))))....((((.(((((.....(.(((........)))).))))).))))......))))... ( -15.80) >DroSec_CAF1 5476 118 - 1 UGAAUGCGCUUUAAUAUGAAGUAAAGCAAUAGCAGUUGCUACUAACUUCAUAACGGCGAACAAAUGAGAUAUUUAGUGAGUCCCAAAGUGAAAUGCGAAAUAUUUCAAGAAUCU--AAAA ......((((....((((((((..((((((....))))))....))))))))..))))......((((((((((.(((..((.......))..))).)))))))))).......--.... ( -26.50) >DroSim_CAF1 5468 118 - 1 UGAAUGCGCUUUAAUAUGAAGUAAAGCAAUAGCAGUUGCUACUAACUUCAUAACGGCGAACAAAUGAGAUAUUUAGUGAGUCCCAAAGUGAAAUGCGAAAUAUUUCAAGAAUCU--AAAA ......((((....((((((((..((((((....))))))....))))))))..))))......((((((((((.(((..((.......))..))).)))))))))).......--.... ( -26.50) >consensus UGAAUGCGCUUUAAUAUGAAGUAAAGCAAUAGCAGUUGCUACUAACUUCAUAACGGCGAACAAAUGAGAUAUUUAGUGAGUCCCAAAGUGAAAUGCGAAAUAUUUCAAGAAUCU__AAAA ......((((....((((((((..((((((....))))))....))))))))..))))......((((((((((.((...((.......))...)).))))))))))............. (-17.15 = -18.43 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:13 2006