Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 21,073,516 – 21,073,701 |
Length | 185 |
Max. P | 0.865747 |
Location | 21,073,516 – 21,073,629 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 93.41 |
Mean single sequence MFE | -32.82 |
Consensus MFE | -29.89 |
Energy contribution | -29.23 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.09 |
Mean z-score | -2.18 |
Structure conservation index | 0.91 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.865747 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21073516 113 + 22224390 AGUACGAGUAUCUGUGUGUAACUACUGUGCAUCUGUGUGCGCUCAACAAAGACCCUUUUGUGCGAUACACAGCCGCACCACUACACGUACAUACAUCGCAUCUAUGCUGCCGU ...(((.(((..((((((((......((((..((((((((((...((((((....))))))))).)))))))..)))).........))))))))..(((....))))))))) ( -33.36) >DroSec_CAF1 3530 108 + 1 AGUACGAGUAUCUGUGUA-----ACAGUGCAUCUGUGUGUGCUCAACAAAGACCCUUUUGUGCGACACACAGCCGCACCACUACACGUGCAUACAUCGCAUCCAUGCUGCCGU ...(((.(((((((((((-----...((((..((((((((((...((((((....)))))))).))))))))..))))...)))))).).))))...(((....)))...))) ( -33.50) >DroSim_CAF1 3618 108 + 1 AGUACGAGUAUCUGUGUA-----ACUGUGCAUCUGUGUGUGCUCAACAAAGACCCUUUUGUGCGAUACACAGCCGCACCACUACACGUGCAUACAUCGCAUCCAUGCUGCCGU ...(((.(((((((((((-----...((((..((((((((((...((((((....)))))))).))))))))..))))...)))))).).))))...(((....)))...))) ( -31.60) >consensus AGUACGAGUAUCUGUGUA_____ACUGUGCAUCUGUGUGUGCUCAACAAAGACCCUUUUGUGCGAUACACAGCCGCACCACUACACGUGCAUACAUCGCAUCCAUGCUGCCGU .(((((.(((...(((..........((((..((((((((((...((((((....))))))))).)))))))..)))))))))).))))).......(((....)))...... (-29.89 = -29.23 + -0.66)
Location | 21,073,589 – 21,073,701 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 97.62 |
Mean single sequence MFE | -36.53 |
Consensus MFE | -36.08 |
Energy contribution | -35.63 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.03 |
Mean z-score | -1.43 |
Structure conservation index | 0.99 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.572308 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21073589 112 - 22224390 GAAAAUGGCAACAAUUCUGGCUCGCAGGACGAGACAAAAGUCAAUGCCAUGUCCGUGCGGCUAUGAGGCACUACGGCAGCAUAGAUGCGAUGUAUGUACGUGUAGUGGUGCG .....((....)).(((((((.(((((((((.(.((........)).).))))).)))))))).)))(((((((.((((((((.((...)).)))))...))).))))))). ( -37.00) >DroSec_CAF1 3598 112 - 1 GAAAAUGGCAACAAUUCAGGCUCGCAGGACGAGACAAAAGUCAAUGCCAUGUCCGUGCGGCUAUAAGGCACUACGGCAGCAUGGAUGCGAUGUAUGCACGUGUAGUGGUGCG (((..((....)).))).(((.(((((((((.(.((........)).).))))).))))))).....(((((((.(((.(.((.((((...)))).)).)))).))))))). ( -36.30) >DroSim_CAF1 3686 112 - 1 GAAAAUGGCAACAAUUCAGGCUCGCAGGACGAGACAAAAGUCAAUGCCAUGUCCGUGCGGCUAUAAGGCACUACGGCAGCAUGGAUGCGAUGUAUGCACGUGUAGUGGUGCG (((..((....)).))).(((.(((((((((.(.((........)).).))))).))))))).....(((((((.(((.(.((.((((...)))).)).)))).))))))). ( -36.30) >consensus GAAAAUGGCAACAAUUCAGGCUCGCAGGACGAGACAAAAGUCAAUGCCAUGUCCGUGCGGCUAUAAGGCACUACGGCAGCAUGGAUGCGAUGUAUGCACGUGUAGUGGUGCG (((..((....)).))).(((.(((((((((.(.((........)).).))))).))))))).....(((((((.(((.(.((.((((...)))).)).)))).))))))). (-36.08 = -35.63 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:06:12 2006