Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 21,056,635 – 21,056,755 |
Length | 120 |
Max. P | 0.681834 |
Location | 21,056,635 – 21,056,755 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.20 |
Mean single sequence MFE | -31.57 |
Consensus MFE | -30.85 |
Energy contribution | -30.41 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.06 |
Mean z-score | -1.57 |
Structure conservation index | 0.98 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.655718 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21056635 120 + 22224390 AAGUGGGAACCGCAAGCCGAAAUGCAAUUAUUUUUGCCGUCCGUCCAAAAACCCGGUAUUUGCAUAUUGUCAACAUAAUUAAAGAGGCUUUUGACUUGUGGUUACACGCCCACUCGAACG .(((((((((((((((.((((((((((.......(((((...((......)).))))).))))))...(((..............))).)))).))))))))).....))))))...... ( -31.04) >DroEre_CAF1 27586 117 + 1 AAGUGGGAACCGCAAGCCGAAAUGCAAUUAUUUUUGCCGUCCGUCCAA-AACCCGGUAUUUGCAUAUUGUCAACAUAAUUAAAGAGGCUUUUGACUUGUGGUUACACGCCCACUCGAA-- .(((((((((((((((.((((((((((.......(((((.........-....))))).))))))...(((..............))).)))).))))))))).....))))))....-- ( -30.96) >DroYak_CAF1 30490 117 + 1 AAGUGGGAACCGCAAGCCGAAAUGCAAUUAUUUUUGCUGUCCGUCCAA-AGCCCGGUAUUUGCAUAUUGUCAACAUAAUUAAAGAGGCUUUUGACUUGUGGUUACACGCCCACUCGAA-- .((((((((((((((...((...((((......))))..)).(((.((-((((((((((....))))))((............)))))))).))))))))))).....))))))....-- ( -32.70) >consensus AAGUGGGAACCGCAAGCCGAAAUGCAAUUAUUUUUGCCGUCCGUCCAA_AACCCGGUAUUUGCAUAUUGUCAACAUAAUUAAAGAGGCUUUUGACUUGUGGUUACACGCCCACUCGAA__ .(((((((((((((((.((((((((((.......(((((...((......)).))))).))))))...(((..............))).)))).))))))))).....))))))...... (-30.85 = -30.41 + -0.44)
Location | 21,056,635 – 21,056,755 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.20 |
Mean single sequence MFE | -33.93 |
Consensus MFE | -32.38 |
Energy contribution | -32.16 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -1.70 |
Structure conservation index | 0.95 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.681834 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21056635 120 - 22224390 CGUUCGAGUGGGCGUGUAACCACAAGUCAAAAGCCUCUUUAAUUAUGUUGACAAUAUGCAAAUACCGGGUUUUUGGACGGACGGCAAAAAUAAUUGCAUUUCGGCUUGCGGUUCCCACUU .....(((((((.....((((.((((((((((((((.......(((((.....)))))........)))))))))..((((..((((......))))..))))))))).))))))))))) ( -35.06) >DroEre_CAF1 27586 117 - 1 --UUCGAGUGGGCGUGUAACCACAAGUCAAAAGCCUCUUUAAUUAUGUUGACAAUAUGCAAAUACCGGGUU-UUGGACGGACGGCAAAAAUAAUUGCAUUUCGGCUUGCGGUUCCCACUU --...(((((((.....((((.((((((.(((((((.......(((((.....)))))........)))))-))....(((..((((......))))..))))))))).))))))))))) ( -32.46) >DroYak_CAF1 30490 117 - 1 --UUCGAGUGGGCGUGUAACCACAAGUCAAAAGCCUCUUUAAUUAUGUUGACAAUAUGCAAAUACCGGGCU-UUGGACGGACAGCAAAAAUAAUUGCAUUUCGGCUUGCGGUUCCCACUU --...(((((((.....((((.((((((.(((((((.......(((((.....)))))........)))))-))....(((..((((......))))..))))))))).))))))))))) ( -34.26) >consensus __UUCGAGUGGGCGUGUAACCACAAGUCAAAAGCCUCUUUAAUUAUGUUGACAAUAUGCAAAUACCGGGUU_UUGGACGGACGGCAAAAAUAAUUGCAUUUCGGCUUGCGGUUCCCACUU .....(((((((.....((((.((((((((.(((((.......(((((.....)))))........))))).)))..((((..((((......))))..))))))))).))))))))))) (-32.38 = -32.16 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:39 2006