Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 21,053,264 – 21,053,423 |
Length | 159 |
Max. P | 0.821894 |
Location | 21,053,264 – 21,053,384 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.78 |
Mean single sequence MFE | -30.17 |
Consensus MFE | -26.91 |
Energy contribution | -26.47 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.03 |
Mean z-score | -1.79 |
Structure conservation index | 0.89 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.611485 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21053264 120 - 22224390 UUAAACGCUUUGAGUAAUCACUCGGUCAAUUUCCAAUCCAUUGGGCUGGCCAAUUAGGCAAAUCAAAUUGACCAAGAGCUCGAAACUCGGACUGCGCCACACAAACACAGAGAAAGGCUA ......(((((((....)).((((((((((((((((....))))....(((.....))).....)))))))))...((..((.....))..))................))).))))).. ( -29.80) >DroEre_CAF1 24367 120 - 1 UUCAACGCUUUGAGUAAUCACUCGGUCAAUUUCCAAUCCAUUGGUCCGGCCAAUUAGGCAAAUCAAAUUGACCAAGAGCUCGAAACUCGGACUGCGCCGCACAAACACAGAGAACAUCUA (((...(((((((((....))))(((((((((((((....))))....(((.....))).....))))))))).)))))........(((......)))..........)))........ ( -27.70) >DroYak_CAF1 26774 120 - 1 UUCGACGCUUUGAGUAAUCACUCGGUCAAUUUCCAAUGCAUUGGGCUGGCCAAUUAGGCAAAUCAAAUUGACCAAGAGCUCGAAACUCGGAAUGCGCCGCACAAACACAUGAAAAAGCUA (((((.(((((((((....))))(((((((((((((....))))....(((.....))).....))))))))).))))))))))...(((......)))..................... ( -33.00) >consensus UUCAACGCUUUGAGUAAUCACUCGGUCAAUUUCCAAUCCAUUGGGCUGGCCAAUUAGGCAAAUCAAAUUGACCAAGAGCUCGAAACUCGGACUGCGCCGCACAAACACAGAGAAAAGCUA ......(((((((((....))))(((((((((((((....))))....(((.....))).....))))))))).)))))(((.....))).(((.(.........).))).......... (-26.91 = -26.47 + -0.44)
Location | 21,053,304 – 21,053,423 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.99 |
Mean single sequence MFE | -32.37 |
Consensus MFE | -29.72 |
Energy contribution | -29.50 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -2.08 |
Structure conservation index | 0.92 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.821894 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 21053304 119 - 22224390 CAAGGA-AGCGACAGAAGUUUCCAUUUAACGGCACUCGGUUUAAACGCUUUGAGUAAUCACUCGGUCAAUUUCCAAUCCAUUGGGCUGGCCAAUUAGGCAAAUCAAAUUGACCAAGAGCU ...(((-(((.......)))))).......................(((((((((....))))(((((((((((((....))))....(((.....))).....))))))))).))))). ( -33.60) >DroEre_CAF1 24407 119 - 1 CAAGGA-AACGACAGAAGUUUCCAUUUAACAGCACUCGGUUUCAACGCUUUGAGUAAUCACUCGGUCAAUUUCCAAUCCAUUGGUCCGGCCAAUUAGGCAAAUCAAAUUGACCAAGAGCU ...(((-(((.......)))))).......................(((((((((....))))(((((((((((((....))))....(((.....))).....))))))))).))))). ( -32.90) >DroYak_CAF1 26814 120 - 1 CAGGGAAAACGACAGAAGUUUCCAUUUAACAGCACUCGGUUUCGACGCUUUGAGUAAUCACUCGGUCAAUUUCCAAUGCAUUGGGCUGGCCAAUUAGGCAAAUCAAAUUGACCAAGAGCU ....((((.(((..(..(((.......)))..)..))).))))...(((((((((....))))(((((((((((((....))))....(((.....))).....))))))))).))))). ( -30.60) >consensus CAAGGA_AACGACAGAAGUUUCCAUUUAACAGCACUCGGUUUCAACGCUUUGAGUAAUCACUCGGUCAAUUUCCAAUCCAUUGGGCUGGCCAAUUAGGCAAAUCAAAUUGACCAAGAGCU ...(((.(((.......)))))).......................(((((((((....))))(((((((((((((....))))....(((.....))).....))))))))).))))). (-29.72 = -29.50 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:37 2006