Locus 8488

Sequence ID X_DroMel_CAF1
Location 21,049,823 – 21,049,943
Length 120
Max. P 0.768344
window13966

overview

Window 6

Location 21,049,823 – 21,049,943
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.32
Mean single sequence MFE -23.81
Consensus MFE -21.82
Energy contribution -21.82
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.34
Structure conservation index 0.92
SVM decision value 0.52
SVM RNA-class probability 0.768344
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 21049823 120 + 22224390
UCAUCCGCCAUCCGCAAUCCCUUGGAAAAAACUCAUUGCUGGGUGCAAUAAAAAUGCAUUUCAUGCUCGAAACAUGACUUGGCUCAAUUUAUUUUACUUUGCCGCAUUUAACGACUUCAC
......((.(((((((((...((......))...))))).)))))).....((((((...(((((.......)))))...(((.................)))))))))........... ( -22.23)
>DroSec_CAF1 20202 119 + 1
CCAUCCGCCAUCCGCAAUCCCUUGGAAA-AACCCAUUGCUGGGUGCAAUAAAAAUGCAUUUCAUGCUCGAAACAUGACUUGGCUCAAUUUAUUUUACUUUGCCGCAUUUAACGACUUCAC
......((.((((((((.....(((...-...))))))).)))))).....((((((...(((((.......)))))...(((.................)))))))))........... ( -24.13)
>DroSim_CAF1 20762 119 + 1
CCAUCCGCCAUCCGCAAUCCCUUGGAAA-AACCCAUUGCUGGGUGCAAUAAAAAUGCAUUUCAUGCUCGAAACAUGACUUGGCUCAAUUUAUUUUACUUUGCCGCAUUUAACGACUUCAC
......((.((((((((.....(((...-...))))))).)))))).....((((((...(((((.......)))))...(((.................)))))))))........... ( -24.13)
>DroEre_CAF1 20974 119 + 1
CCAGCCGCCAUCCGCAAUCCCUUGAAGA-AACCCAUUGCUGGGUGCAAUAAAAAUGCAUUUCAUGCUCGAAACAUGACUUGGCUCAAUUUAUUUUACUUUGCCGCAUUUAACGACUUCAC
......((.....)).......(((((.-.(((((....))))).......((((((...(((((.......)))))...(((.................))))))))).....))))). ( -24.23)
>DroYak_CAF1 22833 119 + 1
CCAUCCGCCAUCCGCAAUCGCUUGAAGA-AACCCAUUGCUGGGUGCAAUAAAAAUGCAUUUCAUGCUCGAAACAUGACUUGGCUCAAUUUAUUUUACUUUGCCGCAUUUAACGACUUCAC
.............((....)).(((((.-.(((((....))))).......((((((...(((((.......)))))...(((.................))))))))).....))))). ( -24.33)
>consensus
CCAUCCGCCAUCCGCAAUCCCUUGGAAA_AACCCAUUGCUGGGUGCAAUAAAAAUGCAUUUCAUGCUCGAAACAUGACUUGGCUCAAUUUAUUUUACUUUGCCGCAUUUAACGACUUCAC
......((.(((((((((................))))).)))))).....((((((...(((((.......)))))...(((.................)))))))))........... (-21.82 = -21.82 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:05:33 2006