Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,404,101 – 2,404,227 |
Length | 126 |
Max. P | 0.999072 |
Location | 2,404,101 – 2,404,201 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 71.52 |
Mean single sequence MFE | -27.12 |
Consensus MFE | -14.68 |
Energy contribution | -15.99 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.17 |
Mean z-score | -2.78 |
Structure conservation index | 0.54 |
SVM decision value | 3.36 |
SVM RNA-class probability | 0.999072 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2404101 100 - 22224390 ACAAUGGAAACCUUGGAAUAUCGCUCAUACGCCAUGUUGAACACAACUUGACCUGUUACACUGGGCGUAUGAGUUAUAUUUUUUGCAAACUUUACCCCAA-------------------- .(((.(....).)))((((((.(((((((((((......((((..........))))......))))))))))).))))))...................-------------------- ( -28.00) >DroSec_CAF1 46941 97 - 1 ACAAAGGAAUCGUUGGAAUAUCGCUCAUACGCCAUGUUGAACACAACUUGACCUGUAACACUGGGCGUAUGGGUAAUAU---CUGCCAACUUUACUACAA-------------------- ...........(((((.((((..((((((((((.(((((....(.....).....)))))...))))))))))..))))---...)))))..........-------------------- ( -29.70) >DroEre_CAF1 49942 91 - 1 ACAAAGAAAUCCUUGGAAUAUCGCAUAUACGCGAUG-------AUACAUCACCAGCCACACUGGGCGUAUGAGUUAUAU---UUGCAAACAUUACUCUUAG------------------- ...(((((((..(((((((((.((.(((((((((((-------...)))).((((.....))))))))))).)).))))---)).)))..)))..))))..------------------- ( -22.80) >DroYak_CAF1 49807 117 - 1 ACAAAGGAAUCCUUGGAAUAUCGCUUAUACGCCACGUUGAACAAAACUUCAUCAGCAAUACGGGGCGGAUGAGUUAUAU---CUGCAAGCUUUACUCCAAGAUAGCUGCACAAUAAGCUG ...........((((((.((..((((.....((.(((((((......))))........)))))(((((((.....)))---))))))))..)).)))))).(((((........))))) ( -28.00) >consensus ACAAAGGAAUCCUUGGAAUAUCGCUCAUACGCCAUGUUGAACAAAACUUCACCAGCAACACUGGGCGUAUGAGUUAUAU___CUGCAAACUUUACUCCAA____________________ .(((.(....).)))..((((.(((((((((((.(((((................)))))...))))))))))).))))......................................... (-14.68 = -15.99 + 1.31)
Location | 2,404,121 – 2,404,227 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 77.73 |
Mean single sequence MFE | -27.00 |
Consensus MFE | -17.55 |
Energy contribution | -18.86 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.17 |
Mean z-score | -1.65 |
Structure conservation index | 0.65 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.594125 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2404121 106 - 22224390 CCUGAAUGGCAGCGUUCUUCUUUUGAACAAUGGAAACCUUGGAAUAUCGCUCAUACGCCAUGUUGAACACAACUUGACCUGUUACACUGGGCGUAUGAGUUAUAUU ...(((((....)))))..........(((.(....).))).(((((.(((((((((((......((((..........))))......))))))))))).))))) ( -29.70) >DroSec_CAF1 46959 97 - 1 --------GCAGCGUUCUUCUUUCGAACAAAGGAAUCGUUGGAAUAUCGCUCAUACGCCAUGUUGAACACAACUUGACCUGUAACACUGGGCGUAUGGGUAAUAU- --------.(((((...((((((......)))))).)))))..((((..((((((((((.(((((....(.....).....)))))...))))))))))..))))- ( -29.90) >DroEre_CAF1 49961 98 - 1 ACUGAAUGACAGCGUUCUCUAUGUGAACAAAGAAAUCCUUGGAAUAUCGCAUAUACGCGAUG-------AUACAUCACCAGCCACACUGGGCGUAUGAGUUAUAU- .....(((((.(((...(((.((....)).)))..((....))....))).(((((((((((-------...)))).((((.....))))))))))).)))))..- ( -26.40) >DroYak_CAF1 49845 105 - 1 CCUGAAUGGCAGCGUUCUUGAUUUGAACAAAGGAAUCCUUGGAAUAUCGCUUAUACGCCACGUUGAACAAAACUUCAUCAGCAAUACGGGGCGGAUGAGUUAUAU- ((...........((((.......)))).((((...)))))).((((.((((((.((((.(((((((......))))........))).)))).)))))).))))- ( -22.00) >consensus CCUGAAUGGCAGCGUUCUUCAUUUGAACAAAGGAAUCCUUGGAAUAUCGCUCAUACGCCAUGUUGAACAAAACUUCACCAGCAACACUGGGCGUAUGAGUUAUAU_ .............((((.......))))...............((((.(((((((((((.(((((................)))))...))))))))))).)))). (-17.55 = -18.86 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:11 2006