Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,994,029 – 20,994,125 |
Length | 96 |
Max. P | 0.574234 |
Location | 20,994,029 – 20,994,125 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 78.49 |
Mean single sequence MFE | -27.43 |
Consensus MFE | -13.29 |
Energy contribution | -15.07 |
Covariance contribution | 1.78 |
Combinations/Pair | 1.10 |
Mean z-score | -2.03 |
Structure conservation index | 0.48 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.574234 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20994029 96 + 22224390 -------AUGCC------UGUGUGCAUGUGUUCGAGUGUCCUGCACGGACUGCUAGUUGCAAAACCUGUAAAUGUCAUUGGCAGACACAGACGAA-AAUAUUUUAAUAAC -------.((.(------(((((...(((((..(.....)..)))))..((((((((.(((...........))).)))))))))))))).))..-.............. ( -23.10) >DroSec_CAF1 75656 94 + 1 -------AUGUC------UGU--GUAUGUGUUCGAGUGUCCUGCACGGACUGCUAGUUGCAAAACCUGUAAAUGUCAUUGGCAGACACAGACGAA-AAUAUUUUAAUAAC -------.((((------(((--((.(((((..(.....)..)))))..((((((((.(((...........))).)))))))))))))))))..-.............. ( -28.10) >DroSim_CAF1 86490 96 + 1 -------AUGUC------UGUGUGUAUGUGUCCGAGUGUCCUGCACGGACAGCUAGUUGCAAAACCUGUAAAUGUCAUUGGCAGACACAGACGAA-AAUAUUUUAAUAAC -------.((((------(((((.(...((((((.((.....)).))))))((((((.(((...........))).))))))).)))))))))..-.............. ( -30.70) >DroEre_CAF1 17901 101 + 1 UGUACAUGCAUCAG--------UGUGUGUGCUCGAGUGUCCUGCAAGGACUGCUAGUUGCAGAGCCUGUAAAUGUCAUUGGCAGACACAGACGAA-AAUAUUUUAAUAAC .(((((((((....--------)))))))))(((.(((((.((((.((.((((.....))))..))))))..(((.....))))))))...))).-.............. ( -28.80) >DroWil_CAF1 20373 84 + 1 -----CUCUCUC------UGUGUGUCUAUGU---------------UGGCUGCUUGUUACUGUCCCUGUAAAUGUCAUUGGCAGACACAUAGGAAAAAUAUUUUAAUAAC -----...((.(------(((((((((..((---------------..(..((...((((.......))))..))..)..))))))))))))))................ ( -21.60) >DroYak_CAF1 19825 106 + 1 ---ACAUGUGUCAGAGUGUGUGUGUGUGUGUGCGAGUGUCCUGCACGGACCGCUAGUUGCAGAGCCUGUAAAUGUCAUUGGCAGACACAGACGAA-AAUAUUUUAAUAAC ---.....(((.(((((((.(((.(((((.(((.((((.(.((((.((..(((.....)).)..))))))...).)))).))).))))).)))..-.))))))).))).. ( -32.30) >consensus _______AUGUC______UGUGUGUAUGUGUUCGAGUGUCCUGCACGGACUGCUAGUUGCAAAACCUGUAAAUGUCAUUGGCAGACACAGACGAA_AAUAUUUUAAUAAC .......................((.((((((.....((((.....)))).((((((.(((...........))).)))))).)))))).)).................. (-13.29 = -15.07 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:04:09 2006