Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,904,129 – 20,904,222 |
Length | 93 |
Max. P | 0.514422 |
Location | 20,904,129 – 20,904,222 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 84.88 |
Mean single sequence MFE | -24.74 |
Consensus MFE | -14.82 |
Energy contribution | -14.26 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.32 |
Mean z-score | -2.05 |
Structure conservation index | 0.60 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.514422 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20904129 93 + 22224390 UGUAAUUUUCGUAUUCAGAAUAAUUGAUACGAACUCUACAGGCCGCAGCU----GAAACGCCUGAUACCUGGGAUUUUCCAGCUGUGCAAAUGUAAA .......(((((((.(((.....))))))))))...((((.((.((((((----((((..(((.......)))..))).)))))))))...)))).. ( -25.30) >DroSec_CAF1 23318 91 + 1 UGUAAUUUUCGUAUUCAGAAUAAUUGA--AUAAUUCUACAGGCCGCAGCU----GAAACGCCUGAUACCUGGAAUUUUUUAGCUGUGCAGAUGUAAA ...........(((((((.....))))--)))....((((.((.((((((----((((..((........))....))))))))))))...)))).. ( -22.30) >DroSim_CAF1 25199 93 + 1 UGUAAUUUUCGUAUUCAGAAUAAUUGAUAGGAACUCUACAGGCCGCAGCU----GAAACGCCUGAUACCUGGAAUUUUCUAGCUGUGCAAAUGUAAA .......(((.(((.(((.....)))))).)))...((((.((.((((((----((((..((........))...)))).))))))))...)))).. ( -20.70) >DroEre_CAF1 16607 93 + 1 UGUAAUGUUCGCAUUCAGAAUAAUUGAUAGGAGCUCCACAGGCCACAGCU----AAAACUCCUGAUAGCUGGCAUUUUCUAGCUGUGCAAACGUAGA ....(((((.((...............((((((.......(((....)))----....))))))((((((((......)))))))))).)))))... ( -22.20) >DroYak_CAF1 20552 97 + 1 UCUAAUUUUUGUAUUCAGAAUAACUGAUAGGAACUCUAUGGGCCACAGGUCUCAGGAACUCCUGAUGCCUGGGAUUUUCUGACUGUGCAAAUGUAAA .......(((((((((((((...((.((((.....)))).))((.(((((.(((((....))))).)))))))...))))))..)))))))...... ( -33.20) >consensus UGUAAUUUUCGUAUUCAGAAUAAUUGAUAGGAACUCUACAGGCCGCAGCU____GAAACGCCUGAUACCUGGAAUUUUCUAGCUGUGCAAAUGUAAA ..............((((.....)))).........((((.((.((((((....((((..((........))..))))..))))))))...)))).. (-14.82 = -14.26 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:37 2006