Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,891,741 – 20,891,846 |
Length | 105 |
Max. P | 0.905249 |
Location | 20,891,741 – 20,891,846 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 86.38 |
Mean single sequence MFE | -20.42 |
Consensus MFE | -14.18 |
Energy contribution | -16.30 |
Covariance contribution | 2.12 |
Combinations/Pair | 1.07 |
Mean z-score | -2.47 |
Structure conservation index | 0.69 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.905249 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20891741 105 - 22224390 AAUAAUAUACUUAAGAACAAUUUUGGCUUUAAUAUUAUCGUGUGAC-GUUCUUAUUCUUAUUUCAUUGUCACAAACCGAAUUUAAGGACAGCAAAAUCUUAAGUAA .......(((((((((....(((((.((((((........((((((-(..................)))))))........))))))....)))))))))))))). ( -21.36) >DroSec_CAF1 11527 102 - 1 AAUAAUAUACUUAAGAACAAUUUUGGCUUUAAUAUAAUCGUGUGAC-GUUCUUGUUU---UUUCAUUGUCACAAACCGAAUUUAAGGACAGGAUAAUCUUAAGUAA .......(((((((((...((((((.((((((........((((((-(....((...---...)).)))))))........)))))).))))))..))))))))). ( -25.79) >DroSim_CAF1 12593 102 - 1 AAUAAUAUACUUAAGAACAAUUUUGGCUUUAAUAUUAUCGUGUGAC-GUUCUCGUUU---UUUAACUGUCACAAACCGAAUUUAAGGACAGGAUAAUCUUAAGUAA .......(((((((((...((((((.((((((........((((((-(.....(((.---...))))))))))........)))))).))))))..))))))))). ( -24.69) >DroEre_CAF1 5833 100 - 1 AAUAAAAUACUUGACAACAAUUUUGGCUUUAAUAUUACCGUAUAAACGCU---AUUU---UUCCAUUGUCACAAAUCCAAUUUAAGGACAGCAUAAUCUUACUUAA ...........((((((......((((.((.((((....)))).)).)))---)...---.....))))))....(((.......))).................. ( -9.84) >consensus AAUAAUAUACUUAAGAACAAUUUUGGCUUUAAUAUUAUCGUGUGAC_GUUCUUAUUU___UUUCAUUGUCACAAACCGAAUUUAAGGACAGCAUAAUCUUAAGUAA .......(((((((((...((((((.((((((........((((((.((...............)).))))))........)))))).))))))..))))))))). (-14.18 = -16.30 + 2.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:03:27 2006