Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,793,540 – 20,793,649 |
Length | 109 |
Max. P | 0.999974 |
Location | 20,793,540 – 20,793,649 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 95.72 |
Mean single sequence MFE | -20.07 |
Consensus MFE | -19.11 |
Energy contribution | -19.11 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.51 |
Structure conservation index | 0.95 |
SVM decision value | 1.72 |
SVM RNA-class probability | 0.973715 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20793540 109 + 22224390 --------CUUUUUUACCCGUUCCCACUUCACAACCGUUCCCUUCGAUUUUUCACCCGGUUGCCAUUGCAACGAAUUUAAUCAAAAGUUACAAUUCCAAUUGUCCGCAAGCGGGUCA --------.......((((((..........((((((...................))))))...((((....(((((......)))))(((((....)))))..)))))))))).. ( -19.11) >DroSec_CAF1 122085 109 + 1 --------CUUUUUUACCCGUUCCCGCUUCACAACCGUUCCCUUCGAUUUUUCACCCGGUUGCCAUUGCAACGAAUUUAAUCAAAAGUUACAAUUCCAAUUGUCCGCAAGCGGGUCA --------...........(..((((((((.((((((...................)))))).....((((.(((((((((.....)))).)))))...))))..).))))))).). ( -20.31) >DroSim_CAF1 59097 109 + 1 --------CUUUUUUACCCGUUCCCGCUUCACAACCGUUCCCUUCGAUUUUUCACCCGGUUGCCAUUGCAACGAAUUUAAUCAAAAGUUACAAUUCCAAUUGUCCGCAAGCGGGUCA --------...........(..((((((((.((((((...................)))))).....((((.(((((((((.....)))).)))))...))))..).))))))).). ( -20.31) >DroEre_CAF1 44680 109 + 1 --------CUUUUUUACCCGUUCCCGCUUCACAACCGUUCCCUUCGAUUUUUCACCCGGUUGCCAUUGCAACGAAUUUAAUCAAAAGUUACAAUUCCAAUUGUCCGCAAGCGGGUCA --------...........(..((((((((.((((((...................)))))).....((((.(((((((((.....)))).)))))...))))..).))))))).). ( -20.31) >DroYak_CAF1 96859 117 + 1 CGCUCUACCUUCUCUACCCGUUCCCGCUUCACAACCGUUCUCUUCGAUUUUUCACCCGGUUGCCAUUGCAACGAAUUUAAUCAAAAGUUACAAUUCCAAUUGUCCGCAAGCGGGUCA ...................(..((((((((.((((((...................)))))).....((((.(((((((((.....)))).)))))...))))..).))))))).). ( -20.31) >consensus ________CUUUUUUACCCGUUCCCGCUUCACAACCGUUCCCUUCGAUUUUUCACCCGGUUGCCAUUGCAACGAAUUUAAUCAAAAGUUACAAUUCCAAUUGUCCGCAAGCGGGUCA ...............((((((..........((((((...................))))))...((((....(((((......)))))(((((....)))))..)))))))))).. (-19.11 = -19.11 + -0.00)
Location | 20,793,540 – 20,793,649 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 95.72 |
Mean single sequence MFE | -32.50 |
Consensus MFE | -32.14 |
Energy contribution | -32.18 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -2.66 |
Structure conservation index | 0.99 |
SVM decision value | 5.11 |
SVM RNA-class probability | 0.999974 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20793540 109 - 22224390 UGACCCGCUUGCGGACAAUUGGAAUUGUAACUUUUGAUUAAAUUCGUUGCAAUGGCAACCGGGUGAAAAAUCGAAGGGAACGGUUGUGAAGUGGGAACGGGUAAAAAAG-------- ..(((((((..(......(((.((((((..(((((((((..(((((((((....)))).)))))....)))))))))..)))))).))).)..))..))))).......-------- ( -32.20) >DroSec_CAF1 122085 109 - 1 UGACCCGCUUGCGGACAAUUGGAAUUGUAACUUUUGAUUAAAUUCGUUGCAAUGGCAACCGGGUGAAAAAUCGAAGGGAACGGUUGUGAAGCGGGAACGGGUAAAAAAG-------- ..((((((((((......(((.((((((..(((((((((..(((((((((....)))).)))))....)))))))))..)))))).))).)))))..))))).......-------- ( -33.60) >DroSim_CAF1 59097 109 - 1 UGACCCGCUUGCGGACAAUUGGAAUUGUAACUUUUGAUUAAAUUCGUUGCAAUGGCAACCGGGUGAAAAAUCGAAGGGAACGGUUGUGAAGCGGGAACGGGUAAAAAAG-------- ..((((((((((......(((.((((((..(((((((((..(((((((((....)))).)))))....)))))))))..)))))).))).)))))..))))).......-------- ( -33.60) >DroEre_CAF1 44680 109 - 1 UGACCCGCUUGCGGACAAUUGGAAUUGUAACUUUUGAUUAAAUUCGUUGCAAUGGCAACCGGGUGAAAAAUCGAAGGGAACGGUUGUGAAGCGGGAACGGGUAAAAAAG-------- ..((((((((((......(((.((((((..(((((((((..(((((((((....)))).)))))....)))))))))..)))))).))).)))))..))))).......-------- ( -33.60) >DroYak_CAF1 96859 117 - 1 UGACCCGCUUGCGGACAAUUGGAAUUGUAACUUUUGAUUAAAUUCGUUGCAAUGGCAACCGGGUGAAAAAUCGAAGAGAACGGUUGUGAAGCGGGAACGGGUAGAGAAGGUAGAGCG ..((((((((((..(((((((...((......(((((((..(((((((((....)))).)))))....)))))))))...)))))))...)))))..)))))............... ( -29.50) >consensus UGACCCGCUUGCGGACAAUUGGAAUUGUAACUUUUGAUUAAAUUCGUUGCAAUGGCAACCGGGUGAAAAAUCGAAGGGAACGGUUGUGAAGCGGGAACGGGUAAAAAAG________ ..((((((((((..(((((((.........(((((((((..(((((((((....)))).)))))....)))))))))...)))))))...)))))..)))))............... (-32.14 = -32.18 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:22 2006