Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,756,598 – 20,756,699 |
Length | 101 |
Max. P | 0.556646 |
Location | 20,756,598 – 20,756,699 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 80.23 |
Mean single sequence MFE | -22.48 |
Consensus MFE | -15.49 |
Energy contribution | -15.55 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.09 |
Mean z-score | -1.24 |
Structure conservation index | 0.69 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.556646 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20756598 101 - 22224390 ---------CAGUGUUCUCUGUGCUGUGCUUUUAAUUGAUAUCAUU-GGCCAUGAUUUUAAUUGAACAGUGGCUGGCCAUAAGCCAGUAAAAAUUAUCCUUGCUCGGCCGC------- ---------(((......))).((((.((.(((((((((.(((((.-....))))).))))))))).....((((((.....)))))).............)).))))...------- ( -26.60) >DroPse_CAF1 105007 101 - 1 UUUU----UUGUUUUCUGCUGU-----GCUCUUAAUUGAUAUCGUUCGGCCAUGAUUUUAAUUGAACAGUGGCUGGCCAUAAACCAGCUAAAAUUAUCCCUACACAUCC-C------- ....----.........(((((-----....((((((((.(((((......))))).)))))))))))))((((((.......))))))....................-.------- ( -20.30) >DroSec_CAF1 76020 96 - 1 ---------CAGUGUUCUCUGU-----GCUUUUAAUUGAUAUCAUU-GGCCAUGAUUUUAAUUGAACAGUGGCUGGCCAUAAGCAAGUAAAAAUUAUCCUUGCUCGGCCGC------- ---------(((......))).-----((((((((((((.(((((.-....))))).))))))))).))).((.((((...((((((...........)))))).))))))------- ( -24.70) >DroEre_CAF1 13225 96 - 1 ---------CAGUGUUCUCUGU-----GCUUUUAAUUGAUAUCAUU-GGCCAUGAUUUUAAUUGAACAGUGGCUGGCCAUACGCCAGUAAAAAUUAUCCUUGCUCAGCCGC------- ---------..(((....(((.-----((.(((((((((.(((((.-....))))).))))))))).....((((((.....)))))).............)).))).)))------- ( -22.90) >DroAna_CAF1 18339 101 - 1 ---------CAGUGUUC--UGU-----GCUUUUAAUUGAUAUCAUU-GACCAUGAUUUUAAUUGAACAGUGGCUGGCCAUAAACCAGUAAAAAUUAUCUUUGCCCAGCGGCGUUUGGU ---------((.(((((--...-----......((((((.(((((.-....))))).))))))))))).))(((((.......))))).......(((..((((....))))...))) ( -21.20) >DroPer_CAF1 106115 105 - 1 UUUGUUUUUUUGUUUCUUCUGU-----GCUCUUAAUUGAUAUCGUUCGGCCAUGAUUUUAAUUGAACAGUGGCUGGCCAUAAACCAGCUAAAAUUAUCCCUAUACAUCC-C------- ..................((((-----....((((((((.(((((......))))).))))))))))))(((((((.......)))))))...................-.------- ( -19.20) >consensus _________CAGUGUUCUCUGU_____GCUUUUAAUUGAUAUCAUU_GGCCAUGAUUUUAAUUGAACAGUGGCUGGCCAUAAACCAGUAAAAAUUAUCCUUGCUCAGCCGC_______ ...........................((((((((((((.(((((......))))).))))))))).))).(((((.......))))).............................. (-15.49 = -15.55 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:02:02 2006