Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,742,629 – 20,742,737 |
Length | 108 |
Max. P | 0.812587 |
Location | 20,742,629 – 20,742,737 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 78.83 |
Mean single sequence MFE | -37.76 |
Consensus MFE | -26.79 |
Energy contribution | -27.43 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.27 |
Mean z-score | -1.49 |
Structure conservation index | 0.71 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.812587 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20742629 108 + 22224390 UUCCAGGGACUCCUCCGAGUCCUUGAACAGCGGUAGACCAACCCAGCCCGCGUCUAGGCGAUCAAUGGGCUGGAACUUUAGUUUUUCGCCCCGACGAUAAAGCCCGCC ...(((((((((....)))))))))....((((.........(((((((((((....))).....)))))))).......((((((((......))).))))))))). ( -40.60) >DroSec_CAF1 63812 108 + 1 CUUCAGGGAUUCCUCCGAGUUCUUGAACAGCGGUAGACCAACACAGCCCGCGUCUAGACGAUCAAUGGGCUGGAACUUUAGCUUUUCGCUCCGACGAUAAAGUCCGCC .(((((((((((....)))))))))))..((((..........((((((((((....))).....)))))))........((((((((......))).))))))))). ( -33.90) >DroSim_CAF1 8628 108 + 1 CUUCAGGGAUUCCUCCGAGUUCUUGAACAGCGGUAGACCAACCCAGCCCGCGUCUAGGCGAUCAAUGGGCUGGAACUUUAGCUUUUCGCUCCGACGAUAAAGUCCGCC .(((((((((((....)))))))))))..((((.........(((((((((((....))).....)))))))).......((((((((......))).))))))))). ( -37.60) >DroEre_CAF1 865 108 + 1 CUCCAGGGAUUCGUCGGAGUCCUUGAACAGCGGCACACCCGAACAGCCCGCGUCCACGCGAUCUAUGGGCUGGUACUUCAGUUUCUCGGCCCGACUAUAAAGACCGCC ...(((((((((....)))))))))....(((((..........((..((((....))))..)).((((((((.((....))...))))))))........).)))). ( -37.30) >DroYak_CAF1 49785 108 + 1 CUCCAGGGACUCGUCCGAGUUCCUGAACAGCGGCAGUCCCGCACAGCCCACGUCCAGGCGAUCUAUGGGCUGGAACUUUAGCUUCUCGGCCCGACUAUAAAACCCGCC ...(((((((((....)))))))))....((((.((((.......(((........))).......((((((((((....).))).)))))))))).......)))). ( -38.60) >DroAna_CAF1 4638 105 + 1 CUCCACGUCGUCCUCGGCGU---CGAAGAGCGGCGUCUUCAGGCAUCCGGCGUCCAGACGAUCGAUCGGCUGGUACUUCAGUCCAUCCCCCAGCCGAUAGAGUCCGUG ...(((((((((...(((((---((((((......))))).((...))))))))..)))))((.(((((((((................))))))))).))...)))) ( -38.59) >consensus CUCCAGGGAUUCCUCCGAGUUCUUGAACAGCGGCAGACCAACACAGCCCGCGUCCAGGCGAUCAAUGGGCUGGAACUUUAGCUUUUCGCCCCGACGAUAAAGUCCGCC ...(((((((((....)))))))))....((((..........((((((((((....))).....)))))))...(((((.....((.....))...))))).)))). (-26.79 = -27.43 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:59 2006