Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,736,024 – 20,736,118 |
Length | 94 |
Max. P | 0.761351 |
Location | 20,736,024 – 20,736,118 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 76.67 |
Mean single sequence MFE | -19.68 |
Consensus MFE | -11.06 |
Energy contribution | -11.06 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.32 |
Mean z-score | -1.85 |
Structure conservation index | 0.56 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.761351 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20736024 94 + 22224390 AAUUGACAAAUUGCCUACAUUGAAGCGCUAAUUUUUC-AACAAGAGAAAGAAGUGCAACAAAGG-GAA-GUGGGAUUGGAGUAGGUA---------AGAACAAAUA------- ..(((.....((((((((.(..(.(((((..((((((-.....))))))..))))).((.....-...-))....)..).)))))))---------)...)))...------- ( -22.20) >DroSec_CAF1 43723 94 + 1 AAUUGACAAAUUGCCUACAUUGAAGCGCUAAUUUUUC-AGCAAGAGAAAGAAGUGUGACAAAGG-GAA-GUAGGAUUGGAGUAGCUA---------AAAAUAAAUA------- ......(((....(((((.(((..(((((..((((((-.....))))))..)))))..)))...-...-))))).))).........---------..........------- ( -16.30) >DroSim_CAF1 413 94 + 1 AAUUGACAAAUUGCCUACAUUGAAGCGCUAAUUUUUC-AGCAAGAGAAAGAAGUGUGACAAAGG-GAA-GUAGGAUUGGAGUAGCUA---------AAAAUAAAUA------- ......(((....(((((.(((..(((((..((((((-.....))))))..)))))..)))...-...-))))).))).........---------..........------- ( -16.30) >DroYak_CAF1 44454 95 + 1 AAUUGACAAAUUGCCUACAUUGAAGCGCUAAUUUUUC-AGCAAGAGAAAAAAGUGCGGCAAAGGGGGA-GUGGGAUUGGUGAAAGUA---------AGUACAAAUC------- .((..((..(((.(((...(((..(((((..((((((-.....))))))..)))))..)))..))).)-))..).)..)).......---------..........------- ( -21.10) >DroAna_CAF1 587 107 + 1 AAUUGACAAAUUGCCUACAUUGAGGCGCUAAUUUCUUAAGCGAAAGAGAGA-----GGCAGAGA-GAAGGUAGCAACGGUAAUGGUAGCGGAGCUUAAGCUGAAGAGCAGGUA ...........(((((.(.((..((((((..((((((......))))))..-----))).....-......(((..((.((....)).))..)))...)))..)).).))))) ( -22.50) >consensus AAUUGACAAAUUGCCUACAUUGAAGCGCUAAUUUUUC_AGCAAGAGAAAGAAGUGCGACAAAGG_GAA_GUAGGAUUGGAGUAGGUA_________AAAAUAAAUA_______ .............(((((.(((..(((((..((((((......))))))..)))))..)))........)))))....................................... (-11.06 = -11.06 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:53 2006