Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,682,037 – 20,682,127 |
Length | 90 |
Max. P | 0.797106 |
Location | 20,682,037 – 20,682,127 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 82.72 |
Mean single sequence MFE | -22.97 |
Consensus MFE | -21.21 |
Energy contribution | -20.99 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -1.00 |
Structure conservation index | 0.92 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.797106 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20682037 90 - 22224390 UGCACUUUUGUCGACUCAUUCGAUGCUGAAUCCUUCGGCUUAAGCGCGUUCAGCUUGUUAAAUGCGCUGCUGGCAAAUUGCAUUCCCC--------------AU------ ((((..(((((((...........(((((.....)))))...((((((((.((....)).))))))))..))))))).))))......--------------..------ ( -25.50) >DroEre_CAF1 78444 104 - 1 UGCACCUUUGUCGACUCAUUCGCUGCUGAAUCCUUCGGCUUAAGCGCUUUCAGCUUGUUAAAUGCGCUGCUGGCAAAUUGCAUUCCCCAUUCCACAUUCCCCAU------ ((((..((((((((.....))((.(((((.....)))))...(((((................))))))).)))))).))))......................------ ( -21.49) >DroYak_CAF1 79877 110 - 1 UGCACCUUUGUCGACUCACUCGAUGCUGAAUCCUUCGGCUUAAGCGCUUUCAGUUUGUUAAAUGCGCUGCUGGCGAAUUGCAUUCCCCCUUCCCCAUUCCCCGUCGCCCG .((......(((((.....)))))(((((.....)))))...(((((................))))))).(((((...........................))))).. ( -21.92) >consensus UGCACCUUUGUCGACUCAUUCGAUGCUGAAUCCUUCGGCUUAAGCGCUUUCAGCUUGUUAAAUGCGCUGCUGGCAAAUUGCAUUCCCC_UUCC_CAUUCCCCAU______ ((((..(((((((...........(((((.....)))))...(((((................)))))..))))))).))))............................ (-21.21 = -20.99 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:27 2006