Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 20,677,252 – 20,677,371 |
Length | 119 |
Max. P | 0.690632 |
Location | 20,677,252 – 20,677,371 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.47 |
Mean single sequence MFE | -31.40 |
Consensus MFE | -19.66 |
Energy contribution | -21.85 |
Covariance contribution | 2.19 |
Combinations/Pair | 1.09 |
Mean z-score | -1.87 |
Structure conservation index | 0.63 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.690632 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 20677252 119 + 22224390 GGAAAACAGCAACUUUCCCGGGCAAAAAAUUGUCAAAGGCA-ACGGCCAAAAAUGGAACUCUGGCAACAGCCAUUUCUGCCAAUUUGUGUGCAAUUUAAAGUGUCCGAAGGGGGACCCUG (((((........)))))((((((..((((((((((((...-.)(((...((((((....(((....)))))))))..)))..))))...)))))))....))))))..((....))... ( -36.90) >DroEre_CAF1 73666 118 + 1 GGAAAACAGCAACUUUUGCGGACAAAAAAUUGUCAAAGGCA-ACGGCCAAAAAUGGAACUCUGGCAACAGCCAUUUCUGCCAAUUUGUGUGCAAUUUAAAGUGUCCGA-AGGGGACCCUG ......(((...(((((.((((((..((((((((((((...-.)(((...((((((....(((....)))))))))..)))..))))...)))))))....)))))))-))))....))) ( -34.60) >DroYak_CAF1 75121 118 + 1 GGAAAACAGCAACUUUGCCGGGCAA-AAAUUGUCAAAGGCA-ACGGCCAAAAAUGGAACUCUGGCAACAGCCAUUUCUGCCAAUUUGUGUGCAAUUUAAAGUGUCCGAAAGGGGACCCUG ((......(((((.(((((.((((.-....))))...))))-).(((...((((((....(((....)))))))))..))).....)).)))........((.(((....))).)))).. ( -36.70) >DroAna_CAF1 45029 94 + 1 CAAAAAAAUU-------------AGAAACUUGUCAAAGGCAAACGGCCGAAGAGGGAACU---------ACAAUUUCUGCCAAUUUGUGUGCAAUUUAAAGUGUCCGAAGGG-C-UCC-- ..........-------------(((((.((((....(((.....)))....((....))---------)))))))))(((..((((..(((........)))..)))).))-)-...-- ( -17.40) >consensus GGAAAACAGCAACUUU_CCGGGCAAAAAAUUGUCAAAGGCA_ACGGCCAAAAAUGGAACUCUGGCAACAGCCAUUUCUGCCAAUUUGUGUGCAAUUUAAAGUGUCCGAAAGGGGACCCUG ..................((((((..(((((((...(.(((...(((...((((((....(((....)))))))))..)))....))).))))))))....))))))..(((....))). (-19.66 = -21.85 + 2.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:01:25 2006